PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00166.1_g00015.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C2H2 | ||||||||
Protein Properties | Length: 269aa MW: 29691.9 Da PI: 6.6986 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18 | 8.1e-06 | 12 | 32 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C++sFs+ s L+ H+++H Rsa1.0_00166.1_g00015.1 12 CQVCKRSFSNGSALRGHMMSH 32 *******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.907 | 10 | 37 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.075 | 10 | 32 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.6E-5 | 11 | 32 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.12E-6 | 11 | 32 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.1E-4 | 12 | 34 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 12 | 32 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.12E-6 | 201 | 224 | No hit | No description |
Pfam | PF13912 | 2.0E-7 | 205 | 230 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 206 | 226 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 4.42E-5 | 242 | 268 | No hit | No description |
Pfam | PF13912 | 1.4E-7 | 245 | 267 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.8 | 245 | 267 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.993 | 245 | 269 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 247 | 267 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MRYSIVRDRK NCQVCKRSFS NGSALRGHMM SHTLKRSAPN AGSASGSTLP SLETSNKVGA 60 NFKPHETVLI RSNHTSNVGE PDRKREEGGQ QINGKRKTIA DEAVEEAGLV LVAMSMGQRP 120 ENSQNWNAID RFLAAPNGKE EYHETDLDSD DDDDDDDNKD VKYKSVAELL AQNMETITED 180 SDEGVDSDAD GETYLVAREK KCKKTFTCDI CGKVLGSCQA LGGHRASNKC KRLKVCDKND 240 QDRRYICGFC GRAFESGQAL GGHTKCHFF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00166.1_g00015.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232542 | 1e-32 | AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435585.1 | 1e-180 | PREDICTED: uncharacterized protein LOC108807841 | ||||
TrEMBL | A0A0D3AY72 | 1e-124 | A0A0D3AY72_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g161550.1 | 1e-124 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14171 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61470.1 | 9e-42 | C2H2-like zinc finger protein |