PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00166.1_g00015.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 269aa    MW: 29691.9 Da    PI: 6.6986
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00166.1_g00015.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2188.1e-061232323
                             ETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                             C+ C++sFs+ s L+ H+++H
  Rsa1.0_00166.1_g00015.1 12 CQVCKRSFSNGSALRGHMMSH 32
                             *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.9071037IPR007087Zinc finger, C2H2
SMARTSM003550.0751032IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-51132IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-61132No hitNo description
Gene3DG3DSA:3.30.160.602.1E-41234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801232IPR007087Zinc finger, C2H2
SuperFamilySSF576671.12E-6201224No hitNo description
PfamPF139122.0E-7205230IPR007087Zinc finger, C2H2
SMARTSM00355230206226IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.42E-5242268No hitNo description
PfamPF139121.4E-7245267IPR007087Zinc finger, C2H2
SMARTSM003550.8245267IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993245269IPR007087Zinc finger, C2H2
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MRYSIVRDRK NCQVCKRSFS NGSALRGHMM SHTLKRSAPN AGSASGSTLP SLETSNKVGA  60
NFKPHETVLI RSNHTSNVGE PDRKREEGGQ QINGKRKTIA DEAVEEAGLV LVAMSMGQRP  120
ENSQNWNAID RFLAAPNGKE EYHETDLDSD DDDDDDDNKD VKYKSVAELL AQNMETITED  180
SDEGVDSDAD GETYLVAREK KCKKTFTCDI CGKVLGSCQA LGGHRASNKC KRLKVCDKND  240
QDRRYICGFC GRAFESGQAL GGHTKCHFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00166.1_g00015.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325421e-32AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018435585.11e-180PREDICTED: uncharacterized protein LOC108807841
TrEMBLA0A0D3AY721e-124A0A0D3AY72_BRAOL; Uncharacterized protein
STRINGBo2g161550.11e-124(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141711523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.19e-42C2H2-like zinc finger protein