PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00136.1_g00021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family YABBY
Protein Properties Length: 168aa    MW: 19060.5 Da    PI: 10.421
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00136.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY199.31.6e-61514424170
                    YABBY  24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee....sastsvsseklsene 105
                              vsvP++slf++vtvrCGhCt+l+s+n+ ++ ++ +            ++++l+++ ++++s v+++e    s s ++ s++ls++ 
  Rsa1.0_00136.1_g00021.1   5 VSVPYASLFTLVTVRCGHCTNLISLNIGVSLHQSSPPP---------IHQDLQHK-QHITSSVTRKEhgssSRSFDHFSTTLSDHV 80 
                              9**************************99988765554.........44444433.333333333330000344445566779*** PP

                    YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                              ++e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  Rsa1.0_00136.1_g00021.1  81 EREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPQISHREAFSTAAKNWAHFPHIHFGL 144
                              *******99.9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.0E-585144IPR006780YABBY protein
SuperFamilySSF470951.13E-788137IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.0E-493136IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MFDQVSVPYA SLFTLVTVRC GHCTNLISLN IGVSLHQSSP PPIHQDLQHK QHITSSVTRK  60
EHGSSSRSFD HFSTTLSDHV EREAPRMPPI RPPEKRQRVP SAYNRFIKEE IQRIKAGNPQ  120
ISHREAFSTA AKNWAHFPHI HFGLKLDSNK KGKQIDQTVA GQKSNGYY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00136.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533261e-175AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482032.11e-120PREDICTED: putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB02e-99YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A3N6SRH41e-113A0A3N6SRH4_BRACR; Uncharacterized protein
TrEMBLM4DQ331e-113M4DQ33_BRARP; Uncharacterized protein
STRINGBra018624.1-P1e-114(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-102YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]