PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00118.1_g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 122aa MW: 13927.6 Da PI: 9.2425 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.7e-18 | 62 | 114 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq + Le+ F++n++++ +++e LA++l L rq+ vWFqNrRa+ Rsa1.0_00118.1_g00022.1 62 RKKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRAR 114 78889***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 83.1 | 4.1e-27 | 62 | 119 | 1 | 58 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkq 58 +kk+rl+keq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR kq Rsa1.0_00118.1_g00022.1 62 RKKLRLTKEQSRLLEDSFRQNHTLNPKQKETLAEHLMLRPRQIEVWFQNRRARNGPKQ 119 69***************************************************98776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.64E-18 | 46 | 114 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 47 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.487 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.0E-16 | 60 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.53E-15 | 61 | 119 | No hit | No description |
Pfam | PF00046 | 8.1E-16 | 62 | 114 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MAILPENSSK LDLTISTPGF SCSPRSDEGS GGEREQLKLD MNRLPSSDED EELSHGGSAP 60 PRKKLRLTKE QSRLLEDSFR QNHTLNPKQK ETLAEHLMLR PRQIEVWFQN RRARNGPKQG 120 TY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00118.1_g00022.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353448 | 1e-107 | AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455112.1 | 1e-78 | PREDICTED: homeobox-leucine zipper protein ATHB-17-like | ||||
Refseq | XP_018455149.1 | 1e-78 | PREDICTED: homeobox-leucine zipper protein ATHB-17-like | ||||
Swissprot | Q8S9N6 | 1e-64 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | A0A078HWE1 | 1e-70 | A0A078HWE1_BRANA; BnaA09g18620D protein | ||||
STRING | Bo2g134170.1 | 2e-68 | (Brassica oleracea) | ||||
STRING | Bo9g070030.1 | 2e-69 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4890 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 4e-67 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
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