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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Rsa1.0_00101.1_g00047.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family |
MYB |
Protein Properties |
Length: 264aa MW: 30344.8 Da PI: 9.1365 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Rsa1.0_00101.1_g00047.1 | genome | RGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 44 | 4.9e-14 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l + +G +W+t++ + g+ R +k+c++rw +yl
Rsa1.0_00101.1_g00047.1 16 KGFWSPEEDEKLRSFILSHGHSCWTTVPIKAGLQRNGKSCRLRWINYL 63
688*******************************************97 PP
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2 | Myb_DNA-binding | 41.9 | 2.3e-13 | 74 | 114 | 6 | 48 |
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+eE+e++ + + lG++ W++Ia++++ gR ++++k++w+++l
Rsa1.0_00101.1_g00047.1 74 AEEEEIIMNFHSSLGNK-WSRIAKYLP-GRADNEIKNYWHSHL 114
7****************.*********.************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MVKTKAGERP KQRQRKGFWS PEEDEKLRSF ILSHGHSCWT TVPIKAGLQR NGKSCRLRWI 60 NYLRPGLKRD MINAEEEEII MNFHSSLGNK WSRIAKYLPG RADNEIKNYW HSHLKKRWLK 120 SQRLQHATSS MSTSSESLVA CGKRNPKTLI SSHVISFQTP PEKSPSSPSQ ESLDNNNKNN 180 YPCSSGPPEI PTLFFSEWFS SSDPHFDHSS DLTESNHNQT QTIQGPASDY EEAGDVNRFP 240 YNEMVMDNNS NWTLNDVVFG SKWQ
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}. |