PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00073.1_g00017.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 370aa    MW: 42254.7 Da    PI: 7.041
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00073.1_g00017.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.52.1e-1184116335
                              XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekv 35 
                              ++k +rr+++NReAA++sR+RKka++++Le+  
  Rsa1.0_00073.1_g00017.1  84 PDKIQRRLAQNREAAKKSRLRKKAYVQHLETSR 116
                              6899*************************9854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003388.2E-682145IPR004827Basic-leucine zipper domain
PfamPF001701.4E-884114IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.25E-786120No hitNo description
Gene3DG3DSA:1.20.5.1703.4E-787127No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
PfamPF141441.2E-29172247IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNSTTTHFVP PRRVGIYEPL HQFGMWGETF KNNIGNGGDM NSPSHIIIPN YQQIENNNLS  60
EDTSHGTGGT PHMFDQEAST SRHPDKIQRR LAQNREAAKK SRLRKKAYVQ HLETSRLKLI  120
HLEQELDRAR QQGFYVGNGI DTNSIGFSEP MNPGIATFEM EYGHWIQEQN NQICELRTVL  180
QGQVSDVELR LLVETAMKHY FDLFRMKSAA AKEDVFFVMS GMWRTSAERF FLWIGGFRPS  240
DLLKVLLPHF DVMTDQQILD VCNLRQSCQQ AEDALSQGME KLQHTLADCV AGGRLGEGSY  300
IPQVNSAMER LEALVSFVNQ ADHLRHEALQ QMNRILTTRQ AARGLLALGE YFQRLRALSS  360
SWATRDREQT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00073.1_g00017.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434759.10.0PREDICTED: transcription factor TGA1-like
RefseqXP_018434760.10.0PREDICTED: transcription factor TGA1-like
RefseqXP_018434761.10.0PREDICTED: transcription factor TGA1-like
RefseqXP_018434762.10.0PREDICTED: transcription factor TGA1-like
RefseqXP_018434763.10.0PREDICTED: transcription factor TGA1-like
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLA0A078H5Z10.0A0A078H5Z1_BRANA; BnaC02g43620D protein
STRINGBra031871.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29762766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.50.0bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  4. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  5. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]