PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00037.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 236aa    MW: 26508.8 Da    PI: 7.7507
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00037.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.5e-19164198135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Rsa1.0_00037.1_g00009.1 164 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRL 198
                              *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.1E-872236IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.833158194IPR000679Zinc finger, GATA-type
SMARTSM004015.4E-14158212IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.75E-14159221No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14162196IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.90E-15163220No hitNo description
PfamPF003201.4E-16164198IPR000679Zinc finger, GATA-type
PROSITE patternPS003440164189IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEYVEAFLSD FSVDDLLDFS NTDAFVREKS SPREEEREKA NSSPDQITLL SPLEDILSLP  60
GSDSKLDVPV GDLEDLEWLS NFVDDSFSET YFSGDFPVNP VASVEVQKQC IPVKPRSKRR  120
RTNGHLWSLG SQYSSLYTGK KKRGRPKAET SSGDGIQQQQ RRRCSHCGVQ KTPQWRMGPL  180
GAKTLCNACG VRFKSGRLLP EYRPACSPTF STEIHSNSHR KVLELRLMKA ADQGQC
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00037.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893731e-153AC189373.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB048F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468185.11e-174PREDICTED: GATA transcription factor 7
SwissprotO655151e-118GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A398AID61e-150A0A398AID6_BRACM; GATA transcription factor
STRINGBra011673.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-103GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]