PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_00030.1_g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 467aa MW: 49353.1 Da PI: 8.0553 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37.7 | 3.5e-12 | 52 | 76 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG C yG+rC+F+H++ Rsa1.0_00030.1_g00013.1 52 EPDCIYYLRTGVCGYGSRCRFNHPR 76 799********************96 PP | |||||||
2 | zf-CCCH | 36.3 | 9.4e-12 | 101 | 125 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtC++G++Ck++H++ Rsa1.0_00030.1_g00013.1 101 HPVCQHFMRTGTCQFGASCKYHHPR 125 789********************96 PP | |||||||
3 | zf-CCCH | 39.4 | 1e-12 | 146 | 170 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++rtG+Ck+G +C+F+H+ Rsa1.0_00030.1_g00013.1 146 GEKECSYYMRTGQCKFGLTCRFNHP 170 7899********************9 PP | |||||||
4 | zf-CCCH | 39.3 | 1.1e-12 | 311 | 335 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++f+rtG Ck+G++C+++H+ Rsa1.0_00030.1_g00013.1 311 DQPECQYFMRTGNCKFGSSCRYHHP 335 689*********************9 PP | |||||||
5 | zf-CCCH | 32.6 | 1.4e-10 | 357 | 382 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C +fa+ G+Ck+G+ CkF H++ Rsa1.0_00030.1_g00013.1 357 GVAQCTHFAQHGICKFGPACKFDHSM 382 6788********************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.7E-4 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.882 | 49 | 77 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-9 | 52 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-6 | 54 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 55 | 76 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.234 | 98 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-5 | 98 | 125 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 99 | 125 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 100 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-5 | 103 | 125 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.408 | 144 | 172 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.4E-6 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-10 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-5 | 146 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-4 | 150 | 169 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.746 | 309 | 337 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-7 | 309 | 336 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.7E-10 | 311 | 335 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 312 | 338 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-5 | 315 | 335 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-4 | 355 | 382 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.347 | 355 | 383 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.4E-8 | 357 | 381 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.31E-5 | 358 | 383 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.1E-4 | 361 | 382 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MERYGRAGEE GSRSDPSIQW TSHGVEASMT RLVLSGGGAG GGGESYPERS DEPDCIYYLR 60 TGVCGYGSRC RFNHPRDRGA VIGGVRGGGG GDGALPERMG HPVCQHFMRT GTCQFGASCK 120 YHHPRQGGGS IAPVSLSYLG YPLRPGEKEC SYYMRTGQCK FGLTCRFNHP VPLGVHGQQP 180 QQQQQQPQPQ MHSVYPTLQS QSMPSSPQQY GLVLSRPSLL PGSYLPSHYG SPPPPMVMPP 240 GMVTYPSWNP YQASITAMPS PGTQPSIGSS SVYGMASLSP PGTAYTRAYQ SGGPSSLTTS 300 TEQQSFPQRP DQPECQYFMR TGNCKFGSSC RYHHPLDAAQ PKTGVVLSSS GLPLLPGVAQ 360 CTHFAQHGIC KFGPACKFDH SMSSSLSYSP SASSLTEIPV APYPIGSSSL SGASAQVSSS 420 NEPTTEAVTA VVSPPTVVSG LSLEKPADTS VDSSSVNSSI EAKTSSN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_00030.1_g00013.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018440489.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 34-like | ||||
Swissprot | Q9SQU4 | 0.0 | C3H34_ARATH; Zinc finger CCCH domain-containing protein 34 | ||||
TrEMBL | V4M3D6 | 0.0 | V4M3D6_EUTSA; Uncharacterized protein | ||||
STRING | XP_006407949.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1779 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06410.1 | 1e-169 | C3H family protein |
Publications ? help Back to Top | |||
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