PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC944_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 499aa MW: 57380.8 Da PI: 4.3097 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 74.2 | 3.1e-23 | 6 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra.......tksgyWkatgkdkev 92 p G rF+Pt+ lv++yLk+kve+++ + ik++++y Pw L++ ++ ++ewy+F++r + + +r+ g+Wk+ gk + RrC944_p3 6 PGGSRFEPTELGLVKRYLKNKVEKNDSDS---IKTLNVYGNAPWLLHHDTNPlyARNEWYYFVPRTVRGVK--TVSRMvpgngesFLGGTWKSVGKRIVI 100 779**********************9665...**************85332233678*******9876543..444542333333449********7666 PP NAM 93 lskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 ++ ++e++g k++Lvf k+ + + +ktdW m+ey+l RrC944_p3 101 KK-NKEVMGYKRVLVFNKNvaGELDKKKTDWHMDEYSL 137 66.999***********7522344568*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-28 | 4 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.589 | 5 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.4E-16 | 7 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MATKYPGGSR FEPTELGLVK RYLKNKVEKN DSDSIKTLNV YGNAPWLLHH DTNPLYARNE 60 WYYFVPRTVR GVKTVSRMVP GNGESFLGGT WKSVGKRIVI KKNKEVMGYK RVLVFNKNVA 120 GELDKKKTDW HMDEYSLHKN GDEFHDLVLC HVRLLNSAER FKPLVPPAHQ LDENNDNHVL 180 PNQDQQEAGF AMQEYEGGDV NQDQQQQEEE QEENDRGDVN QHQQQQQQQQ QEQEGSVILS 240 HPPLEINNNQ EPCPSDDLAY HGAKDDMTGY GLMPNFNDAN QQHEQQQDSP TLLHPPLQMN 300 DNQEHHPFED YAFDGADDNS TFDIDDLLNS LDEWKEQEDS PPTLLFPPLQ SNDNHGQCPP 360 LVPSQVENHN NTIVQNQEQR EALGFANQND MPMIKKERGD DVEQQQQQQD QEQLQKDLMG 420 FLLAPSWDMD LIFDEADAED DFIKEILDVH CTQEQLQELE EEQSKALQRV PQAQDSGVRA 480 DQVMPKESSQ GFLFTDTHT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018470917.1 | 0.0 | PREDICTED: alpha-protein kinase 1-like | ||||
Refseq | XP_018470954.1 | 0.0 | PREDICTED: alpha-protein kinase 1 | ||||
TrEMBL | A0A3P6D889 | 1e-152 | A0A3P6D889_BRACM; Uncharacterized protein | ||||
STRING | Bra033406.1-P | 1e-149 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18837 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03490.1 | 2e-26 | NAC domain containing protein 6 |