PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC944_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 499aa    MW: 57380.8 Da    PI: 4.3097
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC944_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.23.1e-2361372128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra.......tksgyWkatgkdkev 92 
                p G rF+Pt+  lv++yLk+kve+++ +    ik++++y   Pw L++ ++    ++ewy+F++r  +  +    +r+          g+Wk+ gk   +
  RrC944_p3   6 PGGSRFEPTELGLVKRYLKNKVEKNDSDS---IKTLNVYGNAPWLLHHDTNPlyARNEWYYFVPRTVRGVK--TVSRMvpgngesFLGGTWKSVGKRIVI 100
                779**********************9665...**************85332233678*******9876543..444542333333449********7666 PP

        NAM  93 lskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                ++ ++e++g k++Lvf k+   + + +ktdW m+ey+l
  RrC944_p3 101 KK-NKEVMGYKRVLVFNKNvaGELDKKKTDWHMDEYSL 137
                66.999***********7522344568*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-284153IPR003441NAC domain
PROSITE profilePS5100529.5895155IPR003441NAC domain
PfamPF023657.4E-167137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    Send to blast
MATKYPGGSR FEPTELGLVK RYLKNKVEKN DSDSIKTLNV YGNAPWLLHH DTNPLYARNE  60
WYYFVPRTVR GVKTVSRMVP GNGESFLGGT WKSVGKRIVI KKNKEVMGYK RVLVFNKNVA  120
GELDKKKTDW HMDEYSLHKN GDEFHDLVLC HVRLLNSAER FKPLVPPAHQ LDENNDNHVL  180
PNQDQQEAGF AMQEYEGGDV NQDQQQQEEE QEENDRGDVN QHQQQQQQQQ QEQEGSVILS  240
HPPLEINNNQ EPCPSDDLAY HGAKDDMTGY GLMPNFNDAN QQHEQQQDSP TLLHPPLQMN  300
DNQEHHPFED YAFDGADDNS TFDIDDLLNS LDEWKEQEDS PPTLLFPPLQ SNDNHGQCPP  360
LVPSQVENHN NTIVQNQEQR EALGFANQND MPMIKKERGD DVEQQQQQQD QEQLQKDLMG  420
FLLAPSWDMD LIFDEADAED DFIKEILDVH CTQEQLQELE EEQSKALQRV PQAQDSGVRA  480
DQVMPKESSQ GFLFTDTHT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470917.10.0PREDICTED: alpha-protein kinase 1-like
RefseqXP_018470954.10.0PREDICTED: alpha-protein kinase 1
TrEMBLA0A3P6D8891e-152A0A3P6D889_BRACM; Uncharacterized protein
STRINGBra033406.1-P1e-149(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1883757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.12e-26NAC domain containing protein 6