PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC89_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 446aa MW: 49526 Da PI: 5.8381 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 160.4 | 6.9e-50 | 9 | 138 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lp+GfrF+Ptdeelv +yL++k++g++ ++ +vi+ +di+k+ePwdLp + vk++++ew fF++ d+ky++g r nrat +gyWkatgkd+ v+s +++ RrC89_p4 9 LPVGFRFSPTDEELVRYYLRQKINGRDDDV-RVIRAIDICKMEPWDLPdlSVVKTTDSEWLFFCPLDRKYPSGGRMNRATVAGYWKATGKDRMVKSGnSKK 108 79*************************999.99**************96448888999*************************************985566 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g+k+tLvfykgrapkg++t W+mheyr+ RrC89_p4 109 IIGVKRTLVFYKGRAPKGTRTCWIMHEYRA 138 69**************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-57 | 5 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.57 | 9 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-25 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 446 aa Download sequence Send to blast |
MEVLSLDSLP VGFRFSPTDE ELVRYYLRQK INGRDDDVRV IRAIDICKME PWDLPDLSVV 60 KTTDSEWLFF CPLDRKYPSG GRMNRATVAG YWKATGKDRM VKSGNSKKII GVKRTLVFYK 120 GRAPKGTRTC WIMHEYRATE KDLDGTNPGQ NPFVICKLFK KQDVVLPEDV VKSCEVEPAV 180 SSPTELSEVS LAFPKTEEAK PSSDVVESSL AQLDNIDWTS YLELETSDYD IFSPLQSELG 240 SSFNGFQSGS TELFSNQNGD HVHAQYASNE TDQSMFELLD SVLEFPYEFP EQKHVLLQPT 300 PEQITYEPRS LVNDVPETGI KIRARRAQAP GGGAEQFAMQ GVPETGIKIK ARRAQAPGGG 360 AEQFAMQGNA SRRLRLQVNH NSTKQEVKDT DEETITKGCG SFMRSKSSIF EKVAAMGGGS 420 YRGLFKAGVV AVVFAISVCS LTGKFG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-44 | 4 | 162 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-44 | 4 | 162 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-44 | 4 | 162 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-44 | 4 | 162 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 2e-44 | 4 | 162 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 2e-44 | 4 | 162 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator essential for the anti-viral defense called virus basal resistance response pathway (PubMed:11041886, PubMed:15629774, PubMed:18785827, PubMed:24418554). Not involved in HRT-mediated hypersensitive response (HR) and resistance to TCV (PubMed:18785827). Binds DNA non specifically (PubMed:15629774). Activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). {ECO:0000250|UniProtKB:Q9SCK6, ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774, ECO:0000269|PubMed:18785827, ECO:0000269|PubMed:24418554}.; FUNCTION: (Microbial infection) Compromised function in defense response pathway when interacting with the invading viral capsid protein (CP) of turnip crinkle virus (TCV) due to abnormal subcellular localization. {ECO:0000269|PubMed:11041886, ECO:0000269|PubMed:15629774}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by bacterial pathogens type III effector proteins (TTEs). {ECO:0000269|PubMed:16553893}.; INDUCTION: (Microbial infection) Accumulates 2 days post infection with turnip crinkle virus (TCV) (PubMed:24418554). {ECO:0000269|PubMed:24418554}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ420441 | 0.0 | KJ420441.1 Brassica napus NAC transcription factor 91-2 (NAC91-2.1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018484381.1 | 0.0 | PREDICTED: NAC domain-containing protein 91-like isoform X1 | ||||
Swissprot | Q9LKG8 | 0.0 | NAC91_ARATH; NAC domain-containing protein 91 | ||||
TrEMBL | A0A397ZB04 | 0.0 | A0A397ZB04_BRACM; Uncharacterized protein | ||||
STRING | Bo7g096710.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2416 | 28 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24590.2 | 1e-178 | TCV-interacting protein |
Publications ? help Back to Top | |||
---|---|---|---|
|