PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC763_p8

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 447aa MW: 50104.4 Da PI: 6.2343

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC763_p8	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.4	2e-10	166	207	3	41
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 ++k+ rr+++NReAAr+sR+RKka++++Le+ + ++Le+e RrC763_p8 166 QSKALRRLAQNREAARKSRLRKKAYVQQLENsriRLAQLEEE 207 57999************************9833345555554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-6	164	235	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.5E-7	165	210	No hit	No description
PROSITE profile	PS50217	9.117	166	210	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.1E-7	167	207	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.44E-20	168	215	No hit	No description
SuperFamily	SSF57959	2.81E-6	168	211	No hit	No description
PROSITE pattern	PS00036	0	171	186	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.6E-27	253	326	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009909	Biological Process	regulation of flower development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MQSSFKTVPF NPPDFYSQAS FFFRGDSCLD EFHQPINAFH HEEAAVGLSP SQLLSSSSLF 60 VLNVIVAASN NLHYTTFDTV MDYGLREREE ECLDTGQLMY QRGGGTRLGG GEVNSSSLVD 120 KWCDSVSAMA DNSQHTDTST DIDTDDKSQL NGVHQGMLLA TNCSDQSKAL RRLAQNREAA 180 RKSRLRKKAY VQQLENSRIR LAQLEEELKR ARQQGCSVER GASRENTHVA AGNGVFSFEL 240 EYARWMEEHQ RLINDLRAGV HSQLGDNELR VLVDAVMSHY DEIFRLKGIG TKVDVFHMLS 300 GMWQTPAERF FMWLGGFRSS ELLKILGNHV DPLTDQQLIG ICNLQQSSQQ AEDALSQGME 360 ALQQSLLETL SSSSMGPNSP ANVADYMGHM AMAMGKLGTL ENFLRQADLL RQQTLQQLHR 420 ILTTRQAARA FLVIHDYICR LRALSSL

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MQSSFKTVPF NPPDFYSQAS FFFRGDSCLD EFHQPINAFH HEEAAVGLSP SQLLSSSSLF  60
VLNVIVAASN NLHYTTFDTV MDYGLREREE ECLDTGQLMY QRGGGTRLGG GEVNSSSLVD  120
KWCDSVSAMA DNSQHTDTST DIDTDDKSQL NGVHQGMLLA TNCSDQSKAL RRLAQNREAA  180
RKSRLRKKAY VQQLENSRIR LAQLEEELKR ARQQGCSVER GASRENTHVA AGNGVFSFEL  240
EYARWMEEHQ RLINDLRAGV HSQLGDNELR VLVDAVMSHY DEIFRLKGIG TKVDVFHMLS  300
GMWQTPAERF FMWLGGFRSS ELLKILGNHV DPLTDQQLIG ICNLQQSSQQ AEDALSQGME  360
ALQQSLLETL SSSSMGPNSP ANVADYMGHM AMAMGKLGTL ENFLRQADLL RQQTLQQLHR  420
ILTTRQAARA FLVIHDYICR LRALSSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118286	0.0	AK118286.1 Arabidopsis thaliana At1g68640 mRNA for putative bZip transcription factor PERIANTHIA (PAN) / AtbZip46, complete cds, clone: RAFL19-57-M21.
GenBank	BT008586	0.0	BT008586.1 Arabidopsis thaliana clone U50929 putative bZIP transcription factor, PERIANTHIA (At1g68640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018454654.1	0.0	PREDICTED: transcription factor PERIANTHIA isoform X1
Swissprot	Q9SX27	0.0	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	M4CJE5	0.0	M4CJE5_BRARP; Uncharacterized protein
STRING	Bra004329.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM667	28	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	0.0	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]