PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7525_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 348aa    MW: 38921.1 Da    PI: 4.9108
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7525_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.82.2e-49241492128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                  pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++e+ew+fF++r kky++g++++ratk gyWkatgk+++v+s ++++
  RrC7525_p2  24 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPdKSIVKSETEWFFFCSRGKKYPHGSQNRRATKMGYWKATGKERDVKS-SSQV 120
                 69************************999.99***************778888899**************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 +g+k+tLvf+ grapkge+t+W+mhey +
  RrC7525_p2 121 IGTKRTLVFHMGRAPKGERTEWLMHEYCM 149
                 ***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-5313165IPR003441NAC domain
PROSITE profilePS5100551.62723166IPR003441NAC domain
PfamPF023651.6E-2425148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009626Biological Processplant-type hypersensitive response
GO:0009910Biological Processnegative regulation of flower development
GO:0034976Biological Processresponse to endoplasmic reticulum stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005783Cellular Componentendoplasmic reticulum
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEAEAEAVGA FKDTAASVEA ATVFPGFKFS PTDVELISYY LKRKMDGLER SVEVIPETDI  60
YNFEPWDLPD KSIVKSETEW FFFCSRGKKY PHGSQNRRAT KMGYWKATGK ERDVKSSSQV  120
IGTKRTLVFH MGRAPKGERT EWLMHEYCMK GVSTDDALVV CRLRRNKEFH SCTSSHKAPE  180
PDLPAEKHMI MQNGGGAASS RSQADLDSMV DFYLAGESGE ELLNEMAETA DNLQVQTEDD  240
FFADILKDEI INVDEAVTTG NLANEVPTLE SASKAIRVLP LPSMIDNQMA SLLEERPSQQ  300
KKAKGSSGTD QLSSCFVGIY SIKTVNRARW DVIICVVVAL IVMFFYLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-412516719166NO APICAL MERISTEM PROTEIN
1ut4_B1e-412516719166NO APICAL MERISTEM PROTEIN
1ut7_A1e-412516719166NO APICAL MERISTEM PROTEIN
1ut7_B1e-412516719166NO APICAL MERISTEM PROTEIN
3swm_A1e-412516722169NAC domain-containing protein 19
3swm_B1e-412516722169NAC domain-containing protein 19
3swm_C1e-412516722169NAC domain-containing protein 19
3swm_D1e-412516722169NAC domain-containing protein 19
3swp_A1e-412516722169NAC domain-containing protein 19
3swp_B1e-412516722169NAC domain-containing protein 19
3swp_C1e-412516722169NAC domain-containing protein 19
3swp_D1e-412516722169NAC domain-containing protein 19
4dul_A1e-412516719166NAC domain-containing protein 19
4dul_B1e-412516719166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF9747640.0KF974764.1 Brassica napus NAC transcription factor 89-1 (NAC89-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469110.10.0PREDICTED: NAC domain-containing protein 89-like
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A078FB970.0A0A078FB97_BRANA; BnaA02g05540D protein
TrEMBLA0A398AB340.0A0A398AB34_BRACM; Uncharacterized protein
STRINGBra020182.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]