PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7421_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 535aa    MW: 60672.2 Da    PI: 7.276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7421_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23e-13251021397
                 TT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  13 sgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ++ l++p  f+++h  g  +   kt +l++  s ++W vk+  ++ +    +++GW++F+ a++L+ gD+++F+++g++ f  +v++f
  RrC7421_p1  25 TH-LSIPVVFFSKHlkG-RNYHIKTAKLRTdASDKTWLVKI--NGLR----FADGWEGFAVAHDLRIGDIIIFRHEGEMAF--HVTAF 102
                 55.9***********63.4444568888775999*******..5555....9***********************999999..88877 PP
2B3551.4e-171672521095
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 +l+ +rl++p +f +++g+++ + k+++l de+grsW++++ +y+++  +++ + GW++F+ +ng+ +g   +Fkl++ +++ +v++
  RrC7421_p1 167 SLRFDRLYVPISFSRSNGLDNMSCKEIVLLDEEGRSWNLNItTYTNTTMQTYVGPGWRRFCAENGMSQGHQYTFKLVR-KSAPPVIR 252
                 566689***********************************5569999999************************997.67667765 PP
3B366.53.8e-21273364699
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                 ++s+ l+++rl+l ++f++++g++   s ++tl++e+g +W++ l+y  ++++++l+ GWk F++ ng+k+gD+++Fk+++ ++ ++v+ ++++
  RrC7421_p1 273 VSSNDLRKDRLYLKRQFITANGLDRGFS-EITLKNERGGKWSLGLRYYESPDHTYLGPGWKTFCQVNGIKAGDSFMFKVVE-TGDKPVLLLCSS 364
                 5789999***************998776.*************************************************887.666789888875 PP
4B347.53.1e-15437530395
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                 k ++++ +l++  l+lp +f++ +g++k++  +++l d++g + +v    ++++++  + ++kGW+eF++a+g+k+g+++++kl+++ +e+ +v+k
  RrC7421_p1 437 KLTLTPRALRTYKLMLPLSFTRVNGINKPG--KMILLDKDGVKKQVVDLLDQNRNTgiMRIGKGWREFCDAHGVKVGESFLLKLIWEdEEEIPVLK 530
                 6677888899999************99766..7********6666665564444444599*************************99555544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.6E-209106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-1810112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.68712105IPR003340B3 DNA binding domain
CDDcd100171.56E-1413102No hitNo description
SMARTSM010191.5E-2015105IPR003340B3 DNA binding domain
PfamPF023627.3E-827100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.4E-17151250IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-15152252IPR015300DNA-binding pseudobarrel domain
CDDcd100178.75E-11158246No hitNo description
PROSITE profilePS5086313.62158257IPR003340B3 DNA binding domain
SMARTSM010192.2E-18159257IPR003340B3 DNA binding domain
PfamPF023627.3E-16165252IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-17265364IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.875268364IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-18269365IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-24269365IPR003340B3 DNA binding domain
PfamPF023622.1E-19273364IPR003340B3 DNA binding domain
CDDcd100175.11E-15274363No hitNo description
Gene3DG3DSA:2.40.330.107.4E-16427531IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-16431526IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-13434524No hitNo description
PROSITE profilePS5086312.083435534IPR003340B3 DNA binding domain
SMARTSM010192.7E-20435534IPR003340B3 DNA binding domain
PfamPF023622.8E-14436530IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MADDQSLHSP DDPHFFQPLL PGFCTHLSIP VVFFSKHLKG RNYHIKTAKL RTDASDKTWL  60
VKINGLRFAD GWEGFAVAHD LRIGDIIIFR HEGEMAFHVT AFGPSYCNIQ YTSRSSHNIS  120
DDSQDQTNSI GNSSGEKRKR VKKTPRTTKQ NSSSDHSHFM AHVSPWSLRF DRLYVPISFS  180
RSNGLDNMSC KEIVLLDEEG RSWNLNITTY TNTTMQTYVG PGWRRFCAEN GMSQGHQYTF  240
KLVRKSAPPV IRLSLGEPAP ESSLHHSYYL GSVSSNDLRK DRLYLKRQFI TANGLDRGFS  300
EITLKNERGG KWSLGLRYYE SPDHTYLGPG WKTFCQVNGI KAGDSFMFKV VETGDKPVLL  360
LCSSNRGKTP LEFSEDSDDV DSLSSDTSSG DDSSEEPQES EEESLGDEGS SQEWFEMEKE  420
KNIYRASSSY SQDPYVKLTL TPRALRTYKL MLPLSFTRVN GINKPGKMIL LDKDGVKKQV  480
VDLLDQNRNT GIMRIGKGWR EFCDAHGVKV GESFLLKLIW EDEEEIPVLK FSTKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13540KHLKGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473922.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-148REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A397XYM30.0A0A397XYM3_BRACM; Uncharacterized protein (Fragment)
STRINGBo5g044980.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-135B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]