PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC739_p5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Trihelix | ||||||||
Protein Properties | Length: 268aa MW: 30868.9 Da PI: 9.2794 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.1 | 1.1e-13 | 36 | 118 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++ + +L++a + rl+ g+l++++W+evs+++ ++ ++ +qCk++++ l+k+yk++k+ + s +++fd+l+ RrC739_p5 36 WSEDATATLLQAWGHRFVRLNFGNLRQNDWKEVSDAVnsshGDGRRPKTDTQCKSRIDTLKKKYKAEKAKLSP------SAWRFFDHLD 118 *************************************95544444556778*****************99986......57*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.8E-23 | 34 | 119 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
METTTPPSPA TQSKPQQPHS IGSHRQPSAV GREDWWSEDA TATLLQAWGH RFVRLNFGNL 60 RQNDWKEVSD AVNSSHGDGR RPKTDTQCKS RIDTLKKKYK AEKAKLSPSA WRFFDHLDVL 120 IGPISKKPAE EVVKSETLKP YLSLTGAKYR ESSFEQDEEE EEAGDVEGFV ARKHPRVEEG 180 DLSEDSARKE LARTIVKLGE VYERVEVRKQ KMMVELEKQR MEVVKELELQ RMNMLMEMQF 240 ELEKSKNRKR GDGSVRHLVE RGLHLGKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00488 | DAP | Transfer from AT5G05550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189201 | 0.0 | AC189201.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005N03, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467560.1 | 1e-151 | PREDICTED: trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A0D3EHL1 | 1e-128 | A0A0D3EHL1_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6EDP8 | 1e-128 | A0A3P6EDP8_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g177060.1 | 1e-129 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4926 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05550.1 | 1e-96 | sequence-specific DNA binding transcription factors |