PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC6860_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 359aa MW: 40411.6 Da PI: 10.1298

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC6860_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.5e-32	217	270	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ RrC6860_p2 217 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 270 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-15	214	270	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-28	215	270	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.8E-24	217	270	IPR006447	Myb domain, plants
Pfam	PF00249	4.9E-7	218	269	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MEGVFLEKPK SNTTTSALPD LSLNISLPDI TSKEEYRRPS QTDNNRSSNF ELSLSHHHNP 60 SSNPTTRIIH CPDPRNLNFP HHQHYNNPIL NGGSLHQRVD ESDINNIHRP IRGIPVYQNR 120 SFPFHQQTSH SSLPSLGGGG NLNQISVSNS SSGYNNAYRS LQSSPRLRGV PLHHHHHHHH 180 NHYGVVGSSD SSSPHLHGML RSRFLPKMPT KRSMRAPRMR WTSSLHARFV HAVELLGGHE 240 RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTNKPAAS SDGSGEEEIG INGNEVRHQS 300 STDQRAQSDD TSSHQEVDFP STQPRWSNSS RYRHRYDDQN VINISDLSPS KIHSSKPAK

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MEGVFLEKPK SNTTTSALPD LSLNISLPDI TSKEEYRRPS QTDNNRSSNF ELSLSHHHNP  60
SSNPTTRIIH CPDPRNLNFP HHQHYNNPIL NGGSLHQRVD ESDINNIHRP IRGIPVYQNR  120
SFPFHQQTSH SSLPSLGGGG NLNQISVSNS SSGYNNAYRS LQSSPRLRGV PLHHHHHHHH  180
NHYGVVGSSD SSSPHLHGML RSRFLPKMPT KRSMRAPRMR WTSSLHARFV HAVELLGGHE  240
RATPKSVLEL MDVKDLTLAH VKSHLQMYRT VKTTNKPAAS SDGSGEEEIG INGNEVRHQS  300
STDQRAQSDD TSSHQEVDFP STQPRWSNSS RYRHRYDDQN VINISDLSPS KIHSSKPAK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-16	218	272	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-16	218	272	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-16	218	272	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-16	218	272	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-16	218	272	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-16	218	272	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-16	218	272	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-16	218	272	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-16	218	272	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-16	218	272	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-16	218	272	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-16	218	272	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that regulates lateral organ polarity. Promotes lateral organ abaxial identity by repressing the adaxial regulator ASYMMETRIC LEAVES2 (AS2) in abaxial cells. Required for abaxial identity in both leaves and carpels. Functions with KAN2 in the specification of polarity of the ovule outer integument. Regulates cambium activity by repressing the auxin efflux carrier PIN1. Plays a role in lateral root formation and development. {ECO:0000269\|PubMed:11395775, ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:14561401, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928, ECO:0000269\|PubMed:18849474, ECO:0000269\|PubMed:20179097}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by AS2 in adaxial tissue. {ECO:0000269\|PubMed:18849474}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY030192	0.0	AY030192.1 Arabidopsis thaliana clone A1-2 KANADI protein (KAN) mRNA, complete cds.
GenBank	AY048688	0.0	AY048688.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI1 (KAN1) mRNA, complete cds.
GenBank	BT026436	0.0	BT026436.1 Arabidopsis thaliana At5g16560 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018442492.1	0.0	PREDICTED: transcription repressor KAN1-like
Swissprot	Q93WJ9	1e-164	KAN1_ARATH; Transcription repressor KAN1
TrEMBL	A0A3P6E0D0	0.0	A0A3P6E0D0_BRAOL; Uncharacterized protein
STRING	Bo9g163080.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6606	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	1e-139	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Huang T,Kerstetter RA,Irish VF APUM23, a PUF family protein, functions in leaf development and organ polarity in Arabidopsis. J. Exp. Bot., 2014. 65(4): p. 1181-91 [PMID:24449383] Mach J Getting in Shape? Leaves work it out with KANADI1. Plant Cell, 2014. 26(1): p. 4 [PMID:24464293] Jun SE, et al. Comparative analysis of the conserved functions of Arabidopsis DRL1 and yeast KTI12. Mol. Cells, 2015. 38(3): p. 243-50 [PMID:25518926] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442] Xie Y, et al. Meta-Analysis of Arabidopsis KANADI1 Direct Target Genes Identifies a Basic Growth-Promoting Module Acting Upstream of Hormonal Signaling Pathways. Plant Physiol., 2015. 169(2): p. 1240-53 [PMID:26246448] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Singh A, et al. Phytohormonal crosstalk modulates the expression of miR166/165s, target Class III HD-ZIPs, and KANADI genes during root growth in Arabidopsis thaliana. Sci Rep, 2017. 7(1): p. 3408 [PMID:28611467] Caggiano MP, et al. Cell type boundaries organize plant development. Elife, 2018. [PMID:28895530] Ó'Maoiléidigh DS,Stewart D,Zheng B,Coupland G,Wellmer F Floral homeotic proteins modulate the genetic program for leaf development to suppress trichome formation in flowers. Development, 2018. [PMID:29361563]