PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC685_p3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | YABBY | ||||||||
Protein Properties | Length: 187aa MW: 21166 Da PI: 10.0667 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 243.8 | 3.3e-75 | 2 | 163 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee....sastsvs 97 +++ sse+vCyv+CnfC tilavsvP++slf++vtvrCGhCt+l+s+n+ ++ ++ + ++++l+++ ++++s v+++e s s ++ RrC685_p3 2 SIDPSSERVCYVHCNFCRTILAVSVPYASLFTLVTVRCGHCTNLISLNIGVSLHQSSPPP---------IHQDLQHK-QHITSSVTRKEhgssSRSFDHF 91 67899********************************************99988765554.........44444433.3333333333300003444455 PP YABBY 98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++ls++ ++e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl RrC685_p3 92 STTLSDHVEREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPQISHREAFSTAAKNWAHFPHIHFGL 163 66779**********99.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.1E-71 | 6 | 163 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.44E-7 | 108 | 156 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.2E-4 | 112 | 155 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MSIDPSSERV CYVHCNFCRT ILAVSVPYAS LFTLVTVRCG HCTNLISLNI GVSLHQSSPP 60 PIHQDLQHKQ HITSSVTRKE HGSSSRSFDH FSTTLSDHVE REAPRMPPIR PPEKRQRVPS 120 AYNRFIKEEI QRIKAGNPQI SHREAFSTAA KNWAHFPHIH FGLKLDSNKK GKQIDQTVAG 180 QKSNGYY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353326 | 0.0 | AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018482032.1 | 1e-139 | PREDICTED: putative axial regulator YABBY 2 isoform X2 | ||||
Swissprot | Q9XFB0 | 1e-114 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A3P6EPL4 | 1e-129 | A0A3P6EPL4_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g009010.1 | 1e-130 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5581 | 27 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 1e-116 | YABBY family protein |
Publications ? help Back to Top | |||
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