PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC685_p3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family YABBY
Protein Properties Length: 187aa    MW: 21166 Da    PI: 10.0667
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC685_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY243.83.3e-7521632170
      YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekee....sastsvs 97 
                +++ sse+vCyv+CnfC tilavsvP++slf++vtvrCGhCt+l+s+n+ ++ ++ +            ++++l+++ ++++s v+++e    s s ++ 
  RrC685_p3   2 SIDPSSERVCYVHCNFCRTILAVSVPYASLFTLVTVRCGHCTNLISLNIGVSLHQSSPPP---------IHQDLQHK-QHITSSVTRKEhgssSRSFDHF 91 
                67899********************************************99988765554.........44444433.3333333333300003444455 PP

      YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                s++ls++ ++e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl
  RrC685_p3  92 STTLSDHVEREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPQISHREAFSTAAKNWAHFPHIHFGL 163
                66779**********99.9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-716163IPR006780YABBY protein
SuperFamilySSF470951.44E-7108156IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.2E-4112155IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MSIDPSSERV CYVHCNFCRT ILAVSVPYAS LFTLVTVRCG HCTNLISLNI GVSLHQSSPP  60
PIHQDLQHKQ HITSSVTRKE HGSSSRSFDH FSTTLSDHVE REAPRMPPIR PPEKRQRVPS  120
AYNRFIKEEI QRIKAGNPQI SHREAFSTAA KNWAHFPHIH FGLKLDSNKK GKQIDQTVAG  180
QKSNGYY
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533260.0AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018482032.11e-139PREDICTED: putative axial regulator YABBY 2 isoform X2
SwissprotQ9XFB01e-114YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A3P6EPL41e-129A0A3P6EPL4_BRAOL; Uncharacterized protein
STRINGBo5g009010.11e-130(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-116YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]