PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6794_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 248aa    MW: 27462.4 Da    PI: 6.3814
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6794_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof118.52.6e-372581662
      zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +cprC s+ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rk+++s+
  RrC6794_p1 25 PSCPRCGSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGSLRNVPVGGGCRKSRRSK 81
                58***************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-221074IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8172579IPR003851Zinc finger, Dof-type
PfamPF027014.2E-322679IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MERTEALTSS FLWQPNANAN TEITPSCPRC GSSNTKFCYY NNYSLSQPRY FCKSCRRYWT  60
KGGSLRNVPV GGGCRKSRRS KASSSITKTG LTTNSYSSGG GSPNIDLALV YANFLNPKPD  120
KPKLQENCET DFLVEEPVGA LMEPLWSMDI GHGHHHHHHH NYEHQVEHIV DECGYNGLPP  180
FPGEELLPID KSGDWSDALL NGHNHVDVGG VTPAQIVHEP VVHFPDESND STNLLFGSWS  240
PFDFSANG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013603941.11e-146PREDICTED: dof zinc finger protein DOF3.5-like
SwissprotQ9SVC51e-140DOF35_ARATH; Dof zinc finger protein DOF3.5
TrEMBLA0A0D3DS581e-145A0A0D3DS58_BRAOL; Uncharacterized protein
STRINGBo8g080660.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91412238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.11e-120Dof family protein