PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC646_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 183aa    MW: 21278.4 Da    PI: 6.9609
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC646_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_140.46.4e-1373124556
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                +r rr+ +NRe+ArrsR RK+  ++eL   v+ L +eN++  ++l++ ++  
  RrC646_p7  73 RRKRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQILDKLNKASDSN 124
                699************************************9998888776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.9E-1169133IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.25471119IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.69E-1273122No hitNo description
PfamPF001707.2E-1173130IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.4E-973145No hitNo description
CDDcd147024.93E-1774121No hitNo description
PROSITE patternPS0003607691IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MQQNYDSSSI NNMQQQDYFH LNHYYNNLNP STNNNLNLIS YPQIHEPNLQ SPASHNSTTS  60
DEATEETFVI NERRKRRMVS NRESARRSRM RKQRHLDELL SQVAWLRSEN HQILDKLNKA  120
SDSNDLVLQE NLTLKEENLE LRQVITSMKK LGGAEGGRTS LHGRYCSSSL DHDLDQDFSC  180
ITK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18592RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325540.0AC232554.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH013I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475161.11e-129PREDICTED: basic leucine zipper 43-like
RefseqXP_018475182.11e-129PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC22e-30BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0D3B1C91e-115A0A0D3B1C9_BRAOL; Uncharacterized protein
TrEMBLA0A3P6AG931e-115A0A3P6AG93_BRAOL; Uncharacterized protein
STRINGBo3g010620.11e-115(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106321532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15830.14e-74basic leucine-zipper 3
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]