PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC625_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 288aa MW: 32998.9 Da PI: 9.74

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC625_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.9	7.8e-12	37	79	4	50
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +k rr+++NReAAr+sR+RKka++++Lee +L++ + ele RrC625_p2 37 IKMKRRLAQNREAARKSRLRKKAYVQQLEESRLKLSQLEQ----ELE 79 6889*************************97777766554....333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.2E-4	34	92	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-8	37	77	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.013	38	79	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.1E-10	38	79	No hit	No description
SuperFamily	SSF57959	2.38E-7	39	79	No hit	No description
PROSITE pattern	PS00036	0	41	56	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.1E-23	120	172	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MNHFNNLSLG GMSTNLISMI IVQTLLLPLV DDHNNIIKMK RRLAQNREAA RKSRLRKKAY 60 VQQLEESRLK LSQLEQELEM VKQQGLRVSN SIPSGSIINT RIAKFEMEYS HWLEEQSRRS 120 CLNHYANLFR MKSDAAKADV FYLISGMWRT STERFFQWIG GFRPSELLNV VMPYLQPLTD 180 QQVLEVRNLQ QSSQQAEDAL SQGIEKLQQS LVENIAVDAV SMDYPPQMAA ALENLQALEG 240 FVNQADHLRQ QTLQQMAKIL TTRQAARGLL ALGEYLHRLR ALSSLWAA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353384	1e-162	AK353384.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-N08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018452469.1	1e-174	PREDICTED: transcription factor TGA7
Refseq	XP_018452470.1	1e-174	PREDICTED: transcription factor TGA7
Swissprot	Q93ZE2	1e-154	TGA7_ARATH; Transcription factor TGA7
TrEMBL	M4DGM1	1e-176	M4DGM1_BRARP; Uncharacterized protein
STRING	Bra015646.1-P	1e-177	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3061	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-156	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]