PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC6044_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 202aa MW: 23727.8 Da PI: 9.937 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.4 | 3.9e-11 | 74 | 163 | 3 | 82 |
EE-..-HHHHT.T-EE--HHH.HTT...........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEE CS B3 3 kvltpsdvlks.grlvlpkkfaeeh...........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvF 82 k+lt+sdv k +rl+l+k ++++ gk e++ ++++ ++g++ e+ +++++ + vl +GW++Fvk+ +L Df++ RrC6044_p4 74 KQLTKSDVKKDqNRLMLSKAQVDKNflplfeesdtlLGK--EGTRVSVYGPDGKVREMMFKMWNEKT-PVLMSGWNKFVKEYKLSmYCDFLTV 163 89*******9989****************9988875223..5679********88888777799985.56777***********844576653 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03754 | 2.9E-6 | 72 | 151 | IPR005508 | B3 domain-containing protein |
SMART | SM01019 | 2.0E-7 | 72 | 178 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-14 | 73 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.32E-12 | 74 | 178 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.7E-15 | 74 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MVTAAFALTH FMFLRDRIQA DDRENNPSKK RKIIKKDDTE ETLELLLRWT SDPPKNLPEA 60 TMAVLGRCSK PIWKQLTKSD VKKDQNRLML SKAQVDKNFL PLFEESDTLL GKEGTRVSVY 120 GPDGKVREMM FKMWNEKTPV LMSGWNKFVK EYKLSMYCDF LTVLMFMHKE TREICVAIDF 180 TRHPIVKRLS ERISKIVFKV ED |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189306 | 0.0 | AC189306.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB032C14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018467210.1 | 1e-136 | PREDICTED: putative B3 domain-containing protein At4g03160 | ||||
Swissprot | Q9ZR14 | 4e-39 | Y4317_ARATH; Putative B3 domain-containing protein At4g03170 | ||||
TrEMBL | M4C7H0 | 1e-120 | M4C7H0_BRARP; Uncharacterized protein | ||||
STRING | Bra000148.1-P | 1e-121 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2103 | 18 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03170.1 | 7e-40 | B3 family protein |
Publications ? help Back to Top | |||
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