PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC6034_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 169aa    MW: 19902.5 Da    PI: 9.6215
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC6034_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer79.64.1e-25353258
  ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                 +++ Y+eC++NhAa+lG++avDGC+E+ +       +++  CaACgCHR++HRr  +
   RrC6034_p1  3 SSCLYRECMRNHAAKLGSYAVDGCREYSQP------STGDLCAACGCHRSYHRRIDV 53
                 5789***********************998......56789*************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-21450IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.4E-18650IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152318.087751IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-16750IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.4E-1693166IPR009057Homeodomain-like
SuperFamilySSF466898.36E-899165IPR009057Homeodomain-like
TIGRFAMsTIGR015652.5E-29108166IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MQSSCLYREC MRNHAAKLGS YAVDGCREYS QPSTGDLCAA CGCHRSYHRR IDVQPSGQVT  60
RARFPFTSLR RVKQLARLKW KAAAEEREEQ EEEDTEETST EEKMTVNRRR KSKFTAEQRE  120
AMRDYAAKLG WTLKDKRAVR EEISVFCERI GVTRYLFKTW VNNNKKFYH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107112RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00143DAPTransfer from AT1G14687Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437252.11e-123PREDICTED: zinc-finger homeodomain protein 14
SwissprotQ9LQW37e-94ZHD14_ARATH; Zinc-finger homeodomain protein 14
TrEMBLA0A078H8D41e-103A0A078H8D4_BRANA; BnaA09g45550D protein
TrEMBLA0A397Y4H31e-103A0A397Y4H3_BRACM; Uncharacterized protein
TrEMBLM4EDF21e-103M4EDF2_BRARP; Uncharacterized protein
STRINGBra026812.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137282124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14687.13e-94homeobox protein 32