PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC5698_p2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | HSF | ||||||||
Protein Properties | Length: 412aa MW: 46091.9 Da PI: 6.7527 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.4 | 7.1e-36 | 28 | 120 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+ ++e++sws+ +nsfvv++ efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ e+ weF+++ F +g+k+ll++i RrC5698_p2 28 FLSKTYDMVDDPLTDEVVSWSSGNNSFVVWNVPEFAKQFLPKYFKHNNFSSFVRQLNTYGFRKVDPER---------WEFANEGFVRGQKNLLKSII 115 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rkk + RrC5698_p2 116 RKKPS 120 *9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.5E-38 | 21 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 8.84E-34 | 23 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.0E-59 | 24 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 8.2E-31 | 28 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-19 | 28 | 51 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-19 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 67 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-19 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MGSICESVRT VNSSSASTKV VVNSVPPFLS KTYDMVDDPL TDEVVSWSSG NNSFVVWNVP 60 EFAKQFLPKY FKHNNFSSFV RQLNTYGFRK VDPERWEFAN EGFVRGQKNL LKSIIRKKPS 120 QVHLQKQPQV QHSSVGACVE VGKFGLEEEV ERLQRDKNIL MQELVRLRQQ QQVTEHHLQH 180 MGQKVHVMEQ RQQQMMSFLA KAVQSPGFLN QFSQQSSEGN PHISETNKKR RLPVEDQKNS 240 TSHGVNGLSG QIVRYQSSMN EATNSMLQQI QSMSCSGDHH HDPYAQADLL APRQGAAAAS 300 GSSNSDLVGC ETDNGECLVP KMAVLDESMI LGSVGAKNEL LPGGEHSLWE QFFGESTGIG 360 MTDELVSGSV DKEMIMEQLG LQSNLRNVLR NNQQMNHLTE QMGLLISDAL RK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-26 | 23 | 117 | 24 | 129 | Heat shock factor protein 1 |
5d5v_B | 2e-26 | 23 | 117 | 24 | 129 | Heat shock factor protein 1 |
5d5v_D | 2e-26 | 23 | 117 | 24 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018491796.1 | 0.0 | PREDICTED: heat stress transcription factor A-1e-like | ||||
Swissprot | Q9SCW5 | 0.0 | HFA1E_ARATH; Heat stress transcription factor A-1e | ||||
TrEMBL | A0A397ZZQ7 | 0.0 | A0A397ZZQ7_BRACM; Uncharacterized protein | ||||
STRING | Bra001071.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2236 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02990.1 | 0.0 | heat shock transcription factor A1E |
Publications ? help Back to Top | |||
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