PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC494_p6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 119aa MW: 13651.7 Da PI: 7.8214 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44 | 4.1e-14 | 15 | 106 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffkv +p d++ l +p +f ++ ++k + +++++ g+ W++kl k+++ + + +GWk+ vk+ +Lk g+f+ F++dg++ f++++ RrC494_p6 15 FFKVYLPDDSGD--DLDIPISFN-SY-LPKSLPEYIIVRSIYGNIWKLKLMR--KRCGnvekISMVNGWKRIVKDEDLKGGEFLAFEFDGSRLFNFCI 106 788886666654..59******8.77.45668889***************44..333324668899*********************99977774443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.16E-19 | 8 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 8.1E-17 | 8 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.84E-13 | 13 | 107 | No hit | No description |
PROSITE profile | PS50863 | 11.603 | 13 | 110 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.5E-14 | 15 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.7E-12 | 15 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
TSKEGDSSDD CFPKFFKVYL PDDSGDDLDI PISFNSYLPK SLPEYIIVRS IYGNIWKLKL 60 MRKRCGNVEK ISMVNGWKRI VKDEDLKGGE FLAFEFDGSR LFNFCIYGHS TCKRLGVCS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 3e-16 | 5 | 112 | 1 | 104 | At1g16640 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018455147.1 | 2e-73 | PREDICTED: B3 domain-containing protein At5g60142-like | ||||
Swissprot | Q9LST3 | 1e-55 | Y5142_ARATH; B3 domain-containing protein At5g60142 | ||||
TrEMBL | A0A078H2E7 | 4e-66 | A0A078H2E7_BRANA; BnaA10g12970D protein | ||||
TrEMBL | A0A397XKE7 | 4e-66 | A0A397XKE7_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A397XS61 | 4e-66 | A0A397XS61_BRACM; Uncharacterized protein | ||||
STRING | Bo9g141120.1 | 3e-64 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60142.1 | 5e-58 | B3 family protein |