PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC4552_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | bZIP | ||||||||
Protein Properties | Length: 193aa MW: 22344.1 Da PI: 10.6548 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 23.4 | 1.3e-07 | 109 | 167 | 4 | 62 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++r +r++kNRe+A rsR+RK++ + + +L a +L +++l+ke a+lk + RrC4552_p1 109 DRRRKRMIKNRESAARSRARKQECLSPYSSSPYQLHAYTNQLEIAISHLQKENARLKRQ 167 799**********************************9999***********9999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 8.5E-12 | 101 | 173 | No hit | No description |
SMART | SM00338 | 4.1E-5 | 106 | 180 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.301 | 108 | 171 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.04E-6 | 110 | 166 | No hit | No description |
CDD | cd14707 | 2.54E-19 | 110 | 178 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 113 | 128 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MTQVTMEEVW KEINLASLQH RQLNINHEPM LSNQNPNNSI FKDFLNKPLN QEPPPSSSTT 60 LHRSLPPSPP ETVLSLNPRS INTHFDESAR FGCFGKKRGG QDSDESRGDR RRKRMIKNRE 120 SAARSRARKQ ECLSPYSSSP YQLHAYTNQL EIAISHLQKE NARLKRQEEQ LKMAEATQHQ 180 AKRKLQRSWT APF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 113 | KKRGGQDSDESRGDRRRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ177148 | 2e-43 | GQ177148.1 Arabidopsis thaliana ecotype Ll-0 FDP gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018435403.1 | 1e-122 | PREDICTED: bZIP transcription factor 27-like | ||||
Refseq | XP_018436513.1 | 1e-122 | PREDICTED: bZIP transcription factor 27-like | ||||
Swissprot | Q7PCC6 | 7e-78 | FDP_ARATH; bZIP transcription factor 27 | ||||
TrEMBL | A0A078GCZ8 | 1e-119 | A0A078GCZ8_BRANA; BnaA07g03000D protein | ||||
TrEMBL | A0A3P6BCR9 | 1e-119 | A0A3P6BCR9_BRACM; Uncharacterized protein | ||||
STRING | Bo9g024710.1 | 5e-97 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1934 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17770.2 | 4e-78 | basic region/leucine zipper motif 27 |
Publications ? help Back to Top | |||
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