PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4375_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 383aa    MW: 43459.9 Da    PI: 5.0893
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4375_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM138.83.4e-43191932128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..................................................k 50 
                  pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp+                                                  +
  RrC4375_p3  19 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPEltifrchvfvlllltdtsaptatcvswsvltlkiwsvkiayfpnflfpdkS 116
                 69************************999.99***************668***********************************99999999999885 PP

         NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                 + ++++ew+fF+ r kky++g++++ratk gyWkatgk+++v+s  +e++g+k+tLvf+ grapkge+t+W+mhey++
  RrC4375_p3 117 IVKSDTEWFFFCARGKKYPHGSQNRRATKMGYWKATGKERDVKS-ASEVIGTKRTLVFHIGRAPKGERTEWIMHEYSM 193
                 666899**************************************.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-161569IPR003441NAC domain
PROSITE profilePS5100545.41518210IPR003441NAC domain
PfamPF023654.2E-2420192IPR003441NAC domain
SuperFamilySSF1019417.72E-3297209IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MEVEPVGVSK DPVEASTVFP GFKFSPTDVE LISYYLKRKM DGLERSVEVI PETDIYNFEP  60
WDLPELTIFR CHVFVLLLLT DTSAPTATCV SWSVLTLKIW SVKIAYFPNF LFPDKSIVKS  120
DTEWFFFCAR GKKYPHGSQN RRATKMGYWK ATGKERDVKS ASEVIGTKRT LVFHIGRAPK  180
GERTEWIMHE YSMKGVSLDD ALVVCRLRRN MEFHKAPEPN LAADKHMILT DDPVSSGSPY  240
DWDSMVDFYL AGESSENLLT EMAETSRNVQ VHTDEDLFAD MLSDEIINLD EMVMTGNTPN  300
EVPTLESASS AIRVLPLPNM IDRQMASLVE EIPPQKKKGK DNSGTEPLSS CFVGLYHIKT  360
VNRARWDVII FVVVLLALLF HLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-331121113169NAC domain-containing protein 19
3swm_B6e-331121113169NAC domain-containing protein 19
3swm_C6e-331121113169NAC domain-containing protein 19
3swm_D6e-331121113169NAC domain-containing protein 19
3swp_A6e-331121113169NAC domain-containing protein 19
3swp_B6e-331121113169NAC domain-containing protein 19
3swp_C6e-331121113169NAC domain-containing protein 19
3swp_D6e-331121113169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475247.10.0PREDICTED: NAC domain-containing protein 89
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A0D3B2A20.0A0A0D3B2A2_BRAOL; Uncharacterized protein
STRINGBo3g016820.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]