PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC372_p3

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

ZF-HD

Protein Properties

Length: 258aa MW: 28724.2 Da PI: 8.7671

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC372_p3	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	25.2	4e-08	16	58	16	59
ZF-HD_dimer 16 slGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++ g D C f++ ge+gt++a+ C CgCH FH +eve+ RrC372_p3 16 KIDGVKKDYCAHFLAG-GEKGTPEAFFCRGCGCHLCFHEKEVEQ 58 57788899*****8.999******************9875 PP
2	ZF-HD_dimer	74.4	1.6e-23	66	112	3	50
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHR 50 +v Y+eC kNhA ++Gg vDGCgEf+++ geegt+++l CaACgCHR RrC372_p3 66 TVSYRECVKNHASQTGGSWVDGCGEFVAA-GEEGTPESLSCAACGCHR 112 799***********************9.999************9 PP
3	ZF-HD_dimer	62.1	1.1e-19	168	226	4	56
ZF-HD_dimer 4 vrYkeClkNhAaslGgha.......vDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 v+Y eC kN A ++ g a DGCgEf+++ ge+g+ +al CaACgCHR+FH++ RrC372_p3 168 VKYGECVKNRARKTRGRArktrgiwWDGCGEFVAA-GEKGSNEALSCAACGCHRSFHKKV 226 89*******999888744444446****9.999****************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-4	5	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.1E-7	16	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-12	66	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	2.0E-22	67	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	21.215	69	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.4E-21	69	112	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	7.5E-18	168	226	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	4.0E-8	168	227	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.2E-16	169	225	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	17.525	170	226	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSRWIETITY GKCVNKIDGV KKDYCAHFLA GGEKGTPEAF FCRGCGCHLC FHEKEVEQYY 60 DRSAATVSYR ECVKNHASQT GGSWVDGCGE FVAAGEEGTP ESLSCAACGC HRRKLLLMES 120 ASVEFMECEK ITVPTILPAE KKEFMAAVAT FVFIRNTLKR FDRSAAIVKY GECVKNRARK 180 TRGRARKTRG IWWDGCGEFV AAGEKGSNEA LSCAACGCHR SFHKKVIWLN IHRRCCHCSL 240 ARIVFNISTK KLMLAKTG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010454130.1	8e-48	PREDICTED: zinc-finger homeodomain protein 8-like
STRING	XP_010454130.1	3e-47	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17489	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	1e-16	homeobox protein 33