PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC2051_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Dof | ||||||||
Protein Properties | Length: 208aa MW: 22696.2 Da PI: 9.4051 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.7 | 3e-39 | 27 | 86 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+s RrC2051_p1 27 QEELKCPRCNSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGTRKNAKRS 86 7899****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-29 | 22 | 85 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.4E-33 | 28 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.357 | 30 | 84 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 32 | 68 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MQDPAAYYQS MMAKQQQQQQ QPEFPNQEEL KCPRCNSPNT KFCYYNNYNL SQPRHFCKSC 60 RRYWTKGGAL RNVPVGGGTR KNAKRSTSSS PASSPSSNSN KKTKNTDPDL SSQTGSKPDT 120 DPTRMLYGFP IGDQDVKGME MVGGGSFSSL LASNMQLGLG GIILDGSGWD TGMGLRRSEV 180 GNGGGGGGNT WTDLAMNRVE KEGDDRRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189344 | 1e-108 | AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018459586.1 | 1e-126 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
Swissprot | Q94AR6 | 8e-85 | DOF31_ARATH; Dof zinc finger protein DOF3.1 | ||||
TrEMBL | A0A078JTQ9 | 1e-102 | A0A078JTQ9_BRANA; BnaC01g43680D protein | ||||
STRING | Bo1g107170.1 | 1e-102 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1269 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21270.1 | 4e-73 | DOF zinc finger protein 2 |
Publications ? help Back to Top | |||
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