PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2051_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Dof
Protein Properties Length: 208aa    MW: 22696.2 Da    PI: 9.4051
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2051_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.73e-392786362
      zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                +++lkcprC+s ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+s
  RrC2051_p1 27 QEELKCPRCNSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGTRKNAKRS 86
                7899****************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-292285IPR003851Zinc finger, Dof-type
PfamPF027014.4E-332884IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3573084IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103268IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MQDPAAYYQS MMAKQQQQQQ QPEFPNQEEL KCPRCNSPNT KFCYYNNYNL SQPRHFCKSC  60
RRYWTKGGAL RNVPVGGGTR KNAKRSTSSS PASSPSSNSN KKTKNTDPDL SSQTGSKPDT  120
DPTRMLYGFP IGDQDVKGME MVGGGSFSSL LASNMQLGLG GIILDGSGWD TGMGLRRSEV  180
GNGGGGGGNT WTDLAMNRVE KEGDDRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893441e-108AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018459586.11e-126PREDICTED: dof zinc finger protein DOF3.1-like
SwissprotQ94AR68e-85DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBLA0A078JTQ91e-102A0A078JTQ9_BRANA; BnaC01g43680D protein
STRINGBo1g107170.11e-102(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21270.14e-73DOF zinc finger protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]