PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1_p11
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 184aa    MW: 21388.2 Da    PI: 8.0724
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1_p11genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.8e-1868122357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
               k+ ++t+eql+ Le  F+++++++ +++++L+k+lgL+ r + vWFqNr+a++k+
  RrC1_p11  68 KKKKMTSEQLKLLEISFQEEMKLDPDRKKKLSKELGLQPRHIAVWFQNRKARWKN 122
               67899************************************************95 PP
2HD-ZIP_I/II1086.8e-3568158292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kk+++++eq+klLE sF+ee kL+p+rK++l++eLglqpr +avWFqnr+AR+k+kqlE+ ye+L++++d + +e++ L++ev +Lr+ ++
     RrC1_p11  68 KKKKMTSEQLKLLEISFQEEMKLDPDRKKKLSKELGLQPRHIAVWFQNRKARWKNKQLEHLYESLRQEFDVVCREKKLLQEEVIQLRSMIR 158
                  9**************************************************************************************8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.01E-1751125IPR009057Homeodomain-like
PROSITE profilePS5007115.7163123IPR001356Homeobox domain
PfamPF000469.5E-1668122IPR001356Homeobox domain
SMARTSM003893.2E-1668127IPR001356Homeobox domain
CDDcd000867.40E-1568124No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1970130IPR009057Homeodomain-like
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MECWSSPFIN GDSSSSFIYP FHSFNNVSGA MVETQGGPLH EHYYATPPAM VESSYGEASN  60
TINGYETKKK KMTSEQLKLL EISFQEEMKL DPDRKKKLSK ELGLQPRHIA VWFQNRKARW  120
KNKQLEHLYE SLRQEFDVVC REKKLLQEEV IQLRSMIRDN GSNKTQQTWE TACNEASSAQ  180
FQLK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00049PBMTransfer from AT2G36610Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018438771.11e-118PREDICTED: homeobox-leucine zipper protein ATHB-22-like isoform X2
SwissprotQ4PSR75e-79ATB22_ARATH; Homeobox-leucine zipper protein ATHB-22
TrEMBLA0A078H8I31e-110A0A078H8I3_BRANA; BnaC04g08710D protein
TrEMBLA0A0D3BRH61e-110A0A0D3BRH6_BRAOL; Uncharacterized protein
STRINGBo4g034490.11e-111(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36610.12e-81homeobox protein 22
Publications ? help Back to Top
  1. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]