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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | RrC19440_p1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 251aa MW: 28668.1 Da PI: 6.624 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 69.3 | 6.3e-22 | 200 | 249 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
k+r+ Wt eLH++F+ av++ G ++A+Pk+ilelm+v+ Lt+e+v SHLQ
RrC19440_p1 200 KARVIWTRELHNKFLAAVDHV-GVKNAVPKKILELMNVDNLTRENVGSHLQ 249
68*******************.9**************************** PP
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| 2 | Response_reg | 53.1 | 1.8e-18 | 57 | 140 | 25 | 109 |
EEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
Response_reg 25 evaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
v+++d+++ alell+e++ +Dl++ D++mp+mdG++l++ e++lp+i + ++ + + + +k Ga d+l+Kp+ +eel +
RrC19440_p1 57 AVTTTDKAQTALELLRENKnkFDLVISDVDMPDMDGFKLVELVGL-EMDLPVISTS--NSVSNVMKGVKHGACDYLVKPVRIEELKN 140
699************888888******************987744.4579987655..6678**********************987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00448 | 4.3E-11 | 1 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
| Gene3D | G3DSA:3.40.50.2300 | 1.1E-32 | 1 | 25 | No hit | No description |
| PROSITE profile | PS50110 | 28.386 | 2 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
| SuperFamily | SSF52172 | 5.41E-22 | 56 | 150 | IPR011006 | CheY-like superfamily |
| Pfam | PF00072 | 5.9E-15 | 57 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
| Gene3D | G3DSA:3.40.50.2300 | 1.1E-32 | 57 | 189 | No hit | No description |
| CDD | cd00156 | 2.13E-17 | 58 | 145 | No hit | No description |
| PROSITE profile | PS51294 | 14.094 | 197 | 251 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 5.8E-22 | 197 | 249 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 6.99E-15 | 199 | 249 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.3E-20 | 200 | 250 | IPR006447 | Myb domain, plants |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 251 aa Download sequence Send to blast |
MRVLAVDDDQ TCLRILETLL HRCQYHDFDC SVTKLMNKSL LLCIKDLRLL GVIVCCAVTT 60 TDKAQTALEL LRENKNKFDL VISDVDMPDM DGFKLVELVG LEMDLPVIST SNSVSNVMKG 120 VKHGACDYLV KPVRIEELKN IWQHVVRKSK FKKMKSVVTN NGESEGNSDQ NEVRANRKRK 180 DQLEEEDEEQ DEQERGNEKK ARVIWTRELH NKFLAAVDHV GVKNAVPKKI LELMNVDNLT 240 RENVGSHLQV I |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 3e-23 | 198 | 249 | 3 | 54 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. {ECO:0000269|PubMed:11574878}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK353533 | 1e-115 | AK353533.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-50-C17. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_018459456.1 | 1e-126 | PREDICTED: two-component response regulator ARR10-like isoform X1 | ||||
| Refseq | XP_018459462.1 | 1e-127 | PREDICTED: two-component response regulator ARR10-like isoform X2 | ||||
| Swissprot | O49397 | 2e-94 | ARR10_ARATH; Two-component response regulator ARR10 | ||||
| TrEMBL | A0A0D3A2Q8 | 1e-120 | A0A0D3A2Q8_BRAOL; Two-component response regulator | ||||
| STRING | Bo1g010830.1 | 1e-120 | (Brassica oleracea) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM1981 | 28 | 79 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G31920.1 | 6e-95 | response regulator 10 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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