PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC18_p12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 377aa MW: 43718 Da PI: 5.9801 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.8 | 1.4e-55 | 10 | 139 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++ ++ e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v++ k+ RrC18_p12 10 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQEkcRIGYeERNEWYFFSHKDKKYPTGTRTNRATIAGFWKATGRDKAVYD-KS 107 69****************************.9***************953433332556**************************************.99 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +l+g++ktLvfykgrap+g+ktdW+mheyrle RrC18_p12 108 KLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 139 9*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-61 | 7 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.531 | 10 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-28 | 11 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048759 | Biological Process | xylem vessel member cell differentiation | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MESVDQSCSV PPGFRFHPTD EELVGYYLRK KVASQKIDLD VIRDIDLYRI EPWDLQEKCR 60 IGYEERNEWY FFSHKDKKYP TGTRTNRATI AGFWKATGRD KAVYDKSKLI GMRKTLVFYK 120 GRAPNGQKTD WIMHEYRLES DENAPPQEEG WVVCRAFKKK PTTGQAKNTE TWRSSYFYEE 180 LPNGVGSAME PLNYVSKQKQ NIFAQDLLFK QELEGSDIGL KFIHCDQFIQ LPQLESPSLP 240 NMKRPMSSTS ITSTEKSQNK YKRPLLEGNE HFDELISSKN KDKRKKTSVI TTDWRALDKF 300 VASQLMSQED GVLDFGGPQE DDNSKIGHCN NEENIYNNGI DQMASSSLLS DREEENRFIN 360 GFLCTNLDDD LYRDLHV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-50 | 4 | 160 | 9 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00471 | DAP | Transfer from AT4G36160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189569 | 0.0 | AC189569.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH009I12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018470197.1 | 0.0 | PREDICTED: NAC domain-containing protein 76-like | ||||
Swissprot | O65508 | 0.0 | NAC76_ARATH; NAC domain-containing protein 76 | ||||
TrEMBL | A0A3P6ES98 | 0.0 | A0A3P6ES98_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g005810.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3686 | 26 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36160.1 | 0.0 | NAC domain containing protein 76 |
Publications ? help Back to Top | |||
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