PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1872_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 274aa    MW: 31153 Da    PI: 4.2806
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1872_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.51e-12361121798
                 E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 vlp ++  ++ ++++ ++t +l+ ++g+ W+vk   + ++++ + +++GW++F  +n   ++Df++F++dg+++f  +v++fr
  RrC1872_p2  36 VLPSDYR-KY-YPTPLPQTAVLRKPEGNFWTVKW--TISQDEtISFEDGWSKFITDNAPLDRDFLLFSYDGSRTF--LVSIFR 112
                 6777765.44.3466899****************..444444499************************997666..***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.30720114IPR003340B3 DNA binding domain
SMARTSM010192.4E-627114IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1534112IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-1036112IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.7E-1436112IPR015300DNA-binding pseudobarrel domain
CDDcd100178.54E-1036112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MLNIYVFDIL RFGYVLDVPH LLGFVSGLAL FLTSKVLPSD YRKYYPTPLP QTAVLRKPEG  60
NFWTVKWTIS QDETISFEDG WSKFITDNAP LDRDFLLFSY DGSRTFLVSI FRDGLPVKPK  120
DPVNIQEISD EDDDEIAGDD DGDDQNIIIS LSLGSSDEDD VDTTGDEVNN AHGLTSSQRK  180
RAEAIGDPQM YLDDPSNPDF IALSTCGRTV LVFPKQAKFG DRKDRLVVHK WKELYERNDA  240
TPEDVIICEI LREGDVVRSI KTHFLRNDFY VVII
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126820.11e-105PREDICTED: B3 domain-containing protein At5g57720-like
SwissprotQ9FHH19e-79Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBLA0A3P6A2J91e-104A0A3P6A2J9_BRACM; Uncharacterized protein
TrEMBLM4DV741e-104M4DV74_BRARP; Uncharacterized protein
STRINGBra020417.1-P1e-104(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137971723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57720.16e-56B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]