PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC1872_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 265aa MW: 30046.7 Da PI: 4.7483 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.1 | 4.8e-11 | 20 | 101 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 s+rlvlp + ++ ++++ ++ +l+ ++g+ W+vk + +++++ +++GW +F + ++Df++F++dg+++f +v++fr RrC1872_p1 20 FSQRLVLPSDNR-KY-YPTPLPQASVLRKPEGNFWTVKWT-ISQDDTISFEDGWTKFITDTAPLDRDFLLFSYDGSRTF--LVSIFR 101 568999999986.55.345578889**************4.33344599************************997666..***998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.22E-14 | 5 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-13 | 7 | 101 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.44E-9 | 7 | 101 | No hit | No description |
PROSITE profile | PS50863 | 11.561 | 9 | 103 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-5 | 9 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.2E-9 | 19 | 101 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.84E-5 | 189 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MVFTPYPDFL IIYNSHDLPF SQRLVLPSDN RKYYPTPLPQ ASVLRKPEGN FWTVKWTISQ 60 DDTISFEDGW TKFITDTAPL DRDFLLFSYD GSRTFLVSIF RDGLPVKPKD PVNIQEISDE 120 DDDGDQDMEK EEDNNLNMIN SRSLGSSDKD DADTTGGEAN KAHGRSRKGW SLRKKRAEAI 180 GDPEMYLDDP SNPCFIVTSS SSHMLFISMQ VINDYGLKFG GTIKFIDGFG ELKANIGNGK 240 GRVVVYKWKE IYKRNGAKPE DVIIC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009126820.1 | 1e-128 | PREDICTED: B3 domain-containing protein At5g57720-like | ||||
Swissprot | Q9FHH1 | 2e-92 | Y5772_ARATH; B3 domain-containing protein At5g57720 | ||||
TrEMBL | A0A3P6A2J9 | 1e-127 | A0A3P6A2J9_BRACM; Uncharacterized protein | ||||
TrEMBL | M4DV74 | 1e-127 | M4DV74_BRARP; Uncharacterized protein | ||||
STRING | Bra020417.1-P | 1e-128 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13797 | 17 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57720.1 | 4e-83 | B3 family protein |
Publications ? help Back to Top | |||
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