PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC17735_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | Dof | ||||||||
Protein Properties | Length: 195aa MW: 21244.6 Da PI: 9.1903 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.1 | 5.4e-40 | 31 | 90 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+s RrC17735_p1 31 QEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNAKRS 90 7899****************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.0E-33 | 32 | 88 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.394 | 34 | 88 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-24 | 34 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 36 | 72 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MQDPAAYYQS MMAKQLHQQQ QQQQQPQFPD QEQLKCPRCD SPNTKFCYYN NYNLSQPRHF 60 CKSCRRYWTK GGALRNVPVG GGSRKNAKRS TSSSTSPNSH KKAKTPDPDP SSQKETNPDT 120 DPTRMLYGFP IGDQDVKGME MGVGVGGGGG SFSSLLASNM QLGLGGIMLD GSGWDPGMSL 180 GLRRSEAGNG GGDFH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018486344.1 | 1e-105 | PREDICTED: dof zinc finger protein DOF3.1-like | ||||
Swissprot | Q94AR6 | 2e-80 | DOF31_ARATH; Dof zinc finger protein DOF3.1 | ||||
TrEMBL | V4LBD4 | 1e-97 | V4LBD4_EUTSA; Uncharacterized protein | ||||
STRING | XP_006406292.1 | 2e-98 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1269 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21270.1 | 1e-71 | DOF zinc finger protein 2 |
Publications ? help Back to Top | |||
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