PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC17462_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | TALE | ||||||||
Protein Properties | Length: 446aa MW: 50572 Da PI: 7.7032 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.1 | 8e-10 | 262 | 299 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 F+ ++yp ++e LAk++gLt++qV++WF N R + RrC17462_p1 262 FNHflHPYPRDLDKEMLAKQTGLTKSQVSNWFINARVR 299 5544589*****************************87 PP | |||||||
2 | BELL | 107.1 | 1.1e-34 | 141 | 211 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 rqelq k+akL+s++e+V++ Ykqy++q+qtvissFe+ aglgsa++Yt++Al++iS++Fr++kd+i+ qi RrC17462_p1 141 RQELQLKRAKLISMVEKVEQIYKQYHDQMQTVISSFEQEAGLGSANSYTHMALQTISKKFRAVKDMICLQI 211 79******************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.4E-44 | 79 | 209 | IPR006563 | POX domain |
Pfam | PF07526 | 4.7E-33 | 90 | 207 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.034 | 240 | 303 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-9 | 243 | 307 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.63E-11 | 243 | 304 | No hit | No description |
SuperFamily | SSF46689 | 4.71E-17 | 244 | 310 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-27 | 246 | 309 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 5.0E-18 | 260 | 299 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MAVFFEGETE MREPSSDLFM VNLNPSSDQT MTINTHNNHF YNLYFAPQQH QRRMNKYEVL 60 DHIEQANSST ISTISNGRVT QSFRALAPTY LKVAQELLNE IVHVGNGSRG AKQEKRMNKE 120 SATYELYNGV GNINGEPGVC RQELQLKRAK LISMVEKVEQ IYKQYHDQMQ TVISSFEQEA 180 GLGSANSYTH MALQTISKKF RAVKDMICLQ IKRINNLLGE KECEGVSLAK QLGKMPHNHS 240 NAWRPQRGLP ETAVSVLRTW LFNHFLHPYP RDLDKEMLAK QTGLTKSQVS NWFINARVRV 300 WKPMVEEMYL EEMNIEESRK GGNLNEHGNK GSSSKQLCNN TTSDESSNLF LPPFHQGFIE 360 NETSMQNSFS SCSVMTFGKQ HVNQAKLIQF NGGFENHHAM VGNGVSLSLG MAHSCDQSFN 420 NIQFGSTSNE TKISGVYPSL TYQIMD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 4e-16 | 249 | 307 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 4e-16 | 249 | 307 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481808.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 5 isoform X1 | ||||
Swissprot | Q8S897 | 0.0 | BLH5_ARATH; BEL1-like homeodomain protein 5 | ||||
TrEMBL | A0A078GYM0 | 0.0 | A0A078GYM0_BRANA; BnaA04g15670D protein | ||||
TrEMBL | A0A3P6CTZ7 | 0.0 | A0A3P6CTZ7_BRACM; Uncharacterized protein | ||||
STRING | Bra034335.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14749 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27220.1 | 0.0 | BEL1-like homeodomain 5 |