PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1584_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 469aa    MW: 52709.1 Da    PI: 9.6952
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1584_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.44.1e-21107200599
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++++l+s+rl++p  fa+++g+++ ++k+++l +e+g sW+++++y+  + +++ + GW++F+ +ng+k g   +Fkl++ +++ +v+++ r+
  RrC1584_p5 107 HVSPSSLSSDRLYIPTGFARSNGLDNMSGKEIVLLNEEGGSWNLNMTYKEAGPQTYVRPGWRRFCAENGMKKGHHYTFKLVR-KSAPPVLRLSRA 200
                 57889999****************************************999999999**********************998.888888888775 PP
2B361.51.4e-19221311698
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                 ++s++l+ + l+l ++f++++g++  +s ++t+++e+g sW++ l+   + ++++l+ GWk F++ ng+k+gD+++Fkl++ +++++v+ ++ 
  RrC1584_p5 221 VSSNSLRINKLYLQREFVSANGLDRGCS-EITVKNEWGGSWTIPLRRYESHNHTYLGPGWKTFCQVNGMKAGDSFMFKLVE-TGAKPVLLLCT 311
                 568888999***************8887.****************87778888*************************998.78888888875 PP
3B348.51.5e-15372466397
                 EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
          B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                   ++++++l++  l+lp  f++++g++  ++++++l  ++g ++  v l  +k+ g + ++kGW+eF++a+g+k+g++++++l+++ +e+ +v+k++
  RrC1584_p5 372 RLTLTHNALTTYVLYLPLAFTRANGIN--NPRKIMLLGKDGvKKQVVDLLKNKSTGIMRIGKGWREFCDAHGVKVGESFLLELIWEdKEAIPVLKFC 466
                 5566788888899***********999..5668********555555665455555599*************************9989998988888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.9E-2096197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-1899200IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.706103201IPR003340B3 DNA binding domain
SMARTSM010192.3E-25104201IPR003340B3 DNA binding domain
CDDcd100176.20E-17104190No hitNo description
PfamPF023627.0E-19106200IPR003340B3 DNA binding domain
PROSITE profilePS5086314.72216312IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16216312IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-19217313IPR003340B3 DNA binding domain
PfamPF023621.3E-17221311IPR003340B3 DNA binding domain
CDDcd100176.87E-16222310No hitNo description
SuperFamilySSF1019363.53E-17227312IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-14366467IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16367464IPR015300DNA-binding pseudobarrel domain
CDDcd100176.77E-15369456No hitNo description
PfamPF023621.5E-14370467IPR003340B3 DNA binding domain
PROSITE profilePS5086311.773370468IPR003340B3 DNA binding domain
SMARTSM010197.4E-22370469IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDMVSWEKVD KVSGKGVTTL MAYDHSLHSP NNPHFFRPLL PGFHTHLSIP VAFFLKHVQG  60
SNDHIKTAKL RTDASAKTCS GEKKKRMKKN PITKEESSSD HSQFVAHVSP SSLSSDRLYI  120
PTGFARSNGL DNMSGKEIVL LNEEGGSWNL NMTYKEAGPQ TYVRPGWRRF CAENGMKKGH  180
HYTFKLVRKS APPVLRLSRA EHDPKPPPES PLHHSYYAGS VSSNSLRINK LYLQREFVSA  240
NGLDRGCSEI TVKNEWGGSW TIPLRRYESH NHTYLGPGWK TFCQVNGMKA GDSFMFKLVE  300
TGAKPVLLLC TSNRGETPLE IPEDSDHVHS LSSDTSSGDD SREESQESEE EKRKSGLRCI  360
CSSPYSKQRF VRLTLTHNAL TTYVLYLPLA FTRANGINNP RKIMLLGKDG VKKQVVDLLK  420
NKSTGIMRIG KGWREFCDAH GVKVGESFLL ELIWEDKEAI PVLKFCTKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473959.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-103REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A0D3CDE60.0A0A0D3CDE6_BRAOL; Uncharacterized protein
STRINGBo5g044960.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-94B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]