PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1584_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 464aa    MW: 51845.2 Da    PI: 6.408
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1584_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.81.6e-12251021397
                 TT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  13 sgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ++ l +p  f+ +h  g++    kt +l++  s ++W vk+  ++      lt+GW++F+  ++L+ gD+ +F+++g++ f  +v++f
  RrC1584_p1  25 TH-LNIPVAFFLKHvqGSND-HIKTAKLTTdASAKTWLVKV--DGV----RLTDGWEDFAVGHDLRIGDITIFRHEGEMVF--HVTAF 102
                 34.99*********974443.3356666654899*******..555....5***********************9998888..88776 PP
2B335.81.4e-11160228577
                 -..-HHHHTT-EE--HHH.HTT---..--S.EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesk.tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                  +++++l+s+rl++p  fa+++g+++ ++k +++l +e+grsW+++++y+k + +       ++Fv angL+ g
  RrC1584_p1 160 HVSPSSLSSDRLYIPTGFARSNGLDNMSGKeMIVLVNEEGRSWNLNMTYNKVGMQ-----TFRDFVTANGLEKG 228
                 57889999**************666554440678889**********88777744.....4689*******988 PP
3B348.71.3e-152172922097
                 HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ++f++++g++k ++ ++tl++e g sW + l++  +s+r++l+ GW+ F+++ng+k+ D ++Fkl+++ + ++++ ++
  RrC1584_p1 217 RDFVTANGLEK-GPSEITLKNECGGSWVLGLRHYESSNRTFLGPGWNTFCQENGIKAEDPFMFKLVET-GDKPLLLLC 292
                 57999999886.677*************************************************9985.555666655 PP
4B349.48.2e-16366456292
                 EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
          B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                 +  +++ ++lk+++l lp  f++ + ++k  ++++tl  ++g ++  v l  +k+sg++ ++kGW+eF++a+g+k+g++++++l+++ +e+ +
  RrC1584_p1 366 VRLTLTQSALKTSILHLPLAFTRMNCINK--PRKITLLGKDGvKKQVVDLLKNKSSGTMRIGKGWREFCDAHGVKVGESFLLELIWEdKEAIP 456
                 5667789999999************8775..558********7777777877999999***************************98566544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-209107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-179112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.96912105IPR003340B3 DNA binding domain
CDDcd100171.14E-1213102No hitNo description
SMARTSM010191.4E-1715105IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-11149222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.39E-10152228IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.478156294IPR003340B3 DNA binding domain
CDDcd100173.86E-12157228No hitNo description
SMARTSM010199.1E-18157295IPR003340B3 DNA binding domain
PfamPF023627.6E-14218292IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.6E-12223293IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.02E-14229295IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.82E-17361452IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-16361462IPR015300DNA-binding pseudobarrel domain
CDDcd100173.64E-15363451No hitNo description
PfamPF023622.4E-14365457IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998365463IPR003340B3 DNA binding domain
SMARTSM010191.4E-21365463IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MAGDRSLHSP NNPHFFQPIL PGFHTHLNIP VAFFLKHVQG SNDHIKTAKL TTDASAKTWL  60
VKVDGVRLTD GWEDFAVGHD LRIGDITIFR HEGEMVFHVT AFGPSFCDIQ YTSASSHNIN  120
DDCQDQTTNN TESSGEKRKR VKNPRTKEDS SSDQSQFVAH VSPSSLSSDR LYIPTGFARS  180
NGLDNMSGKE MIVLVNEEGR SWNLNMTYNK VGMQTFRDFV TANGLEKGPS EITLKNECGG  240
SWVLGLRHYE SSNRTFLGPG WNTFCQENGI KAEDPFMFKL VETGDKPLLL LCTSNRGKTP  300
LDCPEDSDDD VHSLSSDTSS EDDSKEESQE SDKESIEDED SSQQCIVEKN SLRCICSSPY  360
SKHRFVRLTL TQSALKTSIL HLPLAFTRMN CINKPRKITL LGKDGVKKQV VDLLKNKSSG  420
TMRIGKGWRE FCDAHGVKVG ESFLLELIWE DKEAIPVLKF GAKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473951.10.0PREDICTED: B3 domain-containing protein REM17-like
TrEMBLM4E7E20.0M4E7E2_BRARP; Uncharacterized protein
STRINGBra024697.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.16e-88B3 family protein