PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1487_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 456aa MW: 52112 Da PI: 6.1988

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1487_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	103.2	3.3e-32	16	90	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v +++++g+kktLv+y+grap+g +t Wvmheyrl RrC1487_p4 16 SKDQEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRRVSL-RDRAIGTKKTLVYYRGRAPHGIRTGWVMHEYRL 90 5789************************************.8899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.392	1	114	IPR003441	NAC domain
SuperFamily	SSF101941	6.15E-38	5	114	IPR003441	NAC domain
Pfam	PF02365	8.4E-16	19	90	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0090602	Biological Process	sieve element enucleation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MDGPPHTFCG KSLLPSKDQE WYFFSPRDRK YPNGSRTNRA TKGGYWKATG KDRRVSLRDR 60 AIGTKKTLVY YRGRAPHGIR TGWVMHEYRL DETECEPTAF GMQDAYALCR VFKKIIIEAK 120 PRDQQQQHHQ PYARTSLNIS RSSSFDVGSD LEISSNTHQV PPYSNAAETQ PPFGNANTIG 180 NHDEWSQYLS HDMPQRFSNY GSPYGPYLNP SKVYTETECG MLQHQMSLPP LQVENSVVQT 240 SIFSDGMNQK GGQCGFSDFT FAASNPNHLY NNNVNDHLIH NENLDEQLLN AGNLTWMNMS 300 NDNLKQQSFV EDTDILPSFQ ENDQDLEYYG GSRTNTISNI EIDEFFSFED RVEDTDKSNI 360 TLNSSGSGMI EEEIRVDHKM LVCTRQTTKV LYHQVVPSQI LKIHINLVGG NEEGRLFMEE 420 EGKDSWFQTA ENVAKMKLKQ IGLVAKHYYK CLTIIF

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MDGPPHTFCG KSLLPSKDQE WYFFSPRDRK YPNGSRTNRA TKGGYWKATG KDRRVSLRDR  60
AIGTKKTLVY YRGRAPHGIR TGWVMHEYRL DETECEPTAF GMQDAYALCR VFKKIIIEAK  120
PRDQQQQHHQ PYARTSLNIS RSSSFDVGSD LEISSNTHQV PPYSNAAETQ PPFGNANTIG  180
NHDEWSQYLS HDMPQRFSNY GSPYGPYLNP SKVYTETECG MLQHQMSLPP LQVENSVVQT  240
SIFSDGMNQK GGQCGFSDFT FAASNPNHLY NNNVNDHLIH NENLDEQLLN AGNLTWMNMS  300
NDNLKQQSFV EDTDILPSFQ ENDQDLEYYG GSRTNTISNI EIDEFFSFED RVEDTDKSNI  360
TLNSSGSGMI EEEIRVDHKM LVCTRQTTKV LYHQVVPSQI LKIHINLVGG NEEGRLFMEE  420
EGKDSWFQTA ENVAKMKLKQ IGLVAKHYYK CLTIIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-31	13	114	61	165	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-31	13	114	61	165	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-31	13	114	61	165	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-31	13	114	61	165	NO APICAL MERISTEM PROTEIN
4dul_A	5e-31	13	114	61	165	NAC domain-containing protein 19
4dul_B	5e-31	13	114	61	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018446023.1	0.0	PREDICTED: NAC domain-containing protein 86 isoform X1
Swissprot	Q9FFI5	0.0	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	A0A078FX12	0.0	A0A078FX12_BRANA; BnaC09g40700D protein
TrEMBL	A0A3P6E6K5	0.0	A0A3P6E6K5_BRAOL; Uncharacterized protein
STRING	Bo9g161440.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4411	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17260.1	0.0	NAC domain containing protein 86

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]