PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC14503_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 309aa MW: 33496.5 Da PI: 10.2209

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC14503_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.8e-39	58	119	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss RrC14503_p1 58 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 119 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	57	109	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-33	60	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	62	116	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	64	100	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MEHIMIPNNN THQSNTTSNA RPNTILTSSG GVSAAGATVS GVSNNNNTPV VVERKARPQE 60 KLNCPRCNST NTKFCYYNNY SLTQPRYFCK GCRRYWTEGG SLRNVPVGGS SRKNKRSSSS 120 SSSNILQTTP SSHGLTTTLP DLNPPIIFSN QIPNKSKGSQ DLNLLSFPVM QDQHHHQHVH 180 MSKFLQMHKM EGNGNMTHQQ PSSSSSLYGS SSSPVSALEL LRTGVNVSSR SGINAFMPSG 240 PMMDSSNNVM YTSSGFPTMG LDTTTTTIVL VMLIVIIIKK IHGNNNNNPS PNNGYWSGMF 300 STTGGGSSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352859	0.0	AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018477396.1	1e-158	PREDICTED: dof zinc finger protein DOF2.5-like isoform X2
Swissprot	Q9ZPY0	1e-127	DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBL	R0HPY2	1e-152	R0HPY2_9BRAS; Uncharacterized protein
STRING	XP_006294447.1	1e-153	(Capsella rubella)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46590.1	3e-93	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]