PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1393_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family YABBY
Protein Properties Length: 188aa    MW: 21111.9 Da    PI: 10.0672
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1393_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY246.74.4e-7621642170
       YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100
                 +++ ss++vCyv+CnfC+t lavsvP++slf++vtvrCGhCt+lls+n+ ++ ++ +         +++l++ +++ +++++ ++  ++s s+++ s++
  RrC1393_p4   2 SLDLSSDRVCYVHCNFCTTTLAVSVPYASLFTLVTVRCGHCTNLLSLNMGVSLHQSSPPPI-----HQDLQQPKQHITSSVTRKEWGSSSRSSNHYSTT 95 
                 56789*******************************************9998887666553.....334444444444444444455555556666667 PP

       YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 +sen d+e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP ishreafs+aaknWahfP+ihfgl
  RrC1393_p4  96 MSENVDREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPAISHREAFSTAAKNWAHFPHIHFGL 164
                 89**********99.9****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046907.3E-726164IPR006780YABBY protein
SuperFamilySSF470953.4E-7109157IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.9E-4113156IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MSLDLSSDRV CYVHCNFCTT TLAVSVPYAS LFTLVTVRCG HCTNLLSLNM GVSLHQSSPP  60
PIHQDLQQPK QHITSSVTRK EWGSSSRSSN HYSTTMSENV DREAPRMPPI RPPEKRQRVP  120
SAYNRFIKEE IQRIKAGNPA ISHREAFSTA AKNWAHFPHI HFGLKLDGNK KGKQLDQTVA  180
GHKSNGYF
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533260.0AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018490563.11e-141PREDICTED: putative axial regulator YABBY 2 isoform X3
SwissprotQ9XFB01e-117YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A078GBE01e-131A0A078GBE0_BRANA; BnaC08g43150D protein
TrEMBLA0A397YFZ41e-131A0A397YFZ4_BRACM; Uncharacterized protein
STRINGBra031629.1-P1e-129(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-113YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]