PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC1393_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

YABBY

Protein Properties

Length: 188aa MW: 21111.9 Da PI: 10.0672

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC1393_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	246.7	4.4e-76	2	164	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 +++ ss++vCyv+CnfC+t lavsvP++slf++vtvrCGhCt+lls+n+ ++ ++ + +++l++ +++ +++++ ++ ++s s+++ s++ RrC1393_p4 2 SLDLSSDRVCYVHCNFCTTTLAVSVPYASLFTLVTVRCGHCTNLLSLNMGVSLHQSSPPPI-----HQDLQQPKQHITSSVTRKEWGSSSRSSNHYSTT 95 56789*****************************************9998887666553.....334444444444444444455555556666667 PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +sen d+e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP ishreafs+aaknWahfP+ihfgl RrC1393_p4 96 MSENVDREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKAGNPAISHREAFSTAAKNWAHFPHIHFGL 164 89******99.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	7.3E-72	6	164	IPR006780	YABBY protein
SuperFamily	SSF47095	3.4E-7	109	157	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.9E-4	113	156	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSLDLSSDRV CYVHCNFCTT TLAVSVPYAS LFTLVTVRCG HCTNLLSLNM GVSLHQSSPP 60 PIHQDLQQPK QHITSSVTRK EWGSSSRSSN HYSTTMSENV DREAPRMPPI RPPEKRQRVP 120 SAYNRFIKEE IQRIKAGNPA ISHREAFSTA AKNWAHFPHI HFGLKLDGNK KGKQLDQTVA 180 GHKSNGYF

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353326	0.0	AK353326.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-29-D23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490563.1	1e-141	PREDICTED: putative axial regulator YABBY 2 isoform X3
Swissprot	Q9XFB0	1e-117	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A078GBE0	1e-131	A0A078GBE0_BRANA; BnaC08g43150D protein
TrEMBL	A0A397YFZ4	1e-131	A0A397YFZ4_BRACM; Uncharacterized protein
STRING	Bra031629.1-P	1e-129	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-113	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]