PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC13351_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 599aa    MW: 67825.9 Da    PI: 6.8474
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC13351_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.75.8e-16121369128
          NAM   9 PtdeelvveyLkkkvegkkleleevikev.diykvePwdLp.k.kvkaeekewyfFskrdkkya....tgkrknr.atksgyWkatgkdkevlskkge 98 
                  Pt+ +l+ + L+ ++e++k +   +i+++ ++y+ ePw L+   +v++ e+ w++F++r+++       +kr++r ++ sg+Wk+tg  +e ++  g 
  RrC13351_p1  12 PTNIDLI-NILRCRIEQDKRPS--FITDMhNLYEKEPWLLQhVrHVSSVENLWFYFVTRKQRPGikktDSKRPSRkVVGSGRWKTTGVLTENKD--GV 104
                  8999999.77999999988777..5777779*********952466667779999998887544433267799997889********9877665..88 PP

          NAM  99 lvglkktLvfy..kgrapkgektdWvmheyrl 128
                   v   kt+ f   +++ ++g  t Wvmhe+ l
  RrC13351_p1 105 RVCSVKTISFKanSETVKDGITTGWVMHEFVL 136
                  89999*****94444678999*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.6314152IPR003441NAC domain
SuperFamilySSF1019411.96E-1612151IPR003441NAC domain
PfamPF023654.1E-812136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MNVTRCSQTR GPTNIDLINI LRCRIEQDKR PSFITDMHNL YEKEPWLLQH VRHVSSVENL  60
WFYFVTRKQR PGIKKTDSKR PSRKVVGSGR WKTTGVLTEN KDGVRVCSVK TISFKANSET  120
VKDGITTGWV MHEFVLDKPG FQELALCRIR FYPRKDNAQY APRLAPIVMG LERGDGSKLV  180
EKNSQKHMTS IHHGVAAPAV ETHQDQGMEQ WSGSCSGEAV SSLALQHQKI MGQDSDYPIF  240
NGGMKKHQDF RSYGQQKTPI LGNMEQYGQS SGNRVEYQHQ YLGQETSMMA NQALKYSDHL  300
PSQHQHFPLN GNKEQNQSLS SCGGSLGESS GQQQYHSLAR QATYLSLMEV QLSAQAMEEQ  360
QQQQGNGYSA FYSSKPSVQC MIDHQMFGSS TLSMAQKNEY LRQKNDLLAL RELDAQQKHL  420
SQDSNLPLTQ QQNKIVGQAT HNVPCSAQPY DQYKGQNNEL PAVPMETHQQ QNNELPVVPI  480
KAQQQHNNEL TTVPMKTEQQ QNNEIPTVPL KSRQQQDIFV RNSAAQLHHE AQDDVPSIDQ  540
TMEALATDPP IDSQKHQELL GDDFFKGLDT EMADLSDDFC VGDLSQQFEK IPIPYSMLY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM4F5F80.0M4F5F8_BRARP; Uncharacterized protein
STRINGBra036314.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144241018
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.14e-11NTM1-like 8