PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RrC12779_p1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 40678.4 Da PI: 6.0871 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166 | 1.3e-51 | 11 | 140 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPt+eel+++yL+kkv++ k++l +vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat+ g+Wkatg+dk ++s RrC12779_p1 11 VPPGFRFHPTEEELLQYYLRKKVNSIKIDL-DVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATTVGFWKATGRDKIIYS- 106 69****************************.9***************962433332455**************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +g+ +g++ktLvfykgrap+g+k+dW+mheyrle RrC12779_p1 107 NGRRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLE 140 999*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.92E-58 | 7 | 175 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.164 | 11 | 175 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009809 | Biological Process | lignin biosynthetic process | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MSISVNGQSQ VPPGFRFHPT EEELLQYYLR KKVNSIKIDL DVIRDVDLNK LEPWDIQEMC 60 KIGTTPQNDW YFFSHKDKKY PTGTRTNRAT TVGFWKATGR DKIIYSNGRR IGMRKTLVFY 120 KGRAPHGQKS DWIMHEYRLE DNVISPDALT VHEVVIIIEE GSQDEGWVVC RIFKKKNLHK 180 TLNSPIGEAS LSGGGGMART SSSSQFLNDD SLEQFLELMG RSCKEELNLD PFMKLPNLES 240 PNSQTFNNNC HVSSPDTNHV VQVSNVVDTS FVTSWSALDR LVASQLNGPI SYSIAAADES 300 QADQDHLALP SLRSPYPNLN RSGSYHDDLS QEHPADMELW NTTTSSLSSS SDPFCHVSNS 360 SG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-48 | 5 | 177 | 9 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00321 | DAP | Transfer from AT2G46770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018481332.1 | 0.0 | PREDICTED: NAC domain-containing protein 43 | ||||
Swissprot | Q84WP6 | 0.0 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | A0A3P6D197 | 0.0 | A0A3P6D197_BRACM; Uncharacterized protein | ||||
TrEMBL | M4FHA8 | 0.0 | M4FHA8_BRARP; Uncharacterized protein | ||||
STRING | Bra040486.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM778 | 28 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 0.0 | NAC family protein |