PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1147_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 391aa    MW: 43770.5 Da    PI: 6.7057
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1147_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.7e-1422981195
                HHTT-EE--HHH.HTT....---..--SEEEE.EETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3 11 lksgrlvlpkkfaeeh....ggkkeesktltl.edesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                + s+ l++p +f+ +h    +  +   k  +l +d s r+W+vk+  ++ +    lt+GW++F+ a++L+ gD++vF++++    elv++
  RrC1147_p4 22 FHSH-LTIPIPFFLKHlqgrN--QDHVKIAKLtTDASDRTWTVKI--DGLK----LTDGWEDFAVAHDLRIGDIIVFRHER----ELVFH 98
                4555.9***********8542..333333444056999*******..6666....***********************655....44554 PP
2B358.71e-18135225597
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  +++++lk +rl+lp +fa+++g++k ++ +++l +e+grsW++kl+++k + +++++ GW++F+ +n++  g   ++kl++ +++ +v++++
  RrC1147_p4 135 KVSASNLKFDRLYLPMSFARANGLDKMSGEEIILLNEEGRSWSLKLKHDKADMHTFIRPGWRRFCAENKMSHGHY-TLKLVQ-KSGPPVIRLC 225
                 4568889999***************************************************************96.899887.7888888887 PP
3B354.32.4e-17250339697
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                 ++s++lk + l+l   f+ ++g++  +s +++l++e+g +W++ l+   +   ++ + GW+ F++ ng+k+gD+++Fkl+g ++ ++v+ ++
  RrC1147_p4 250 VTSNSLKIDKLCLGQAFVIANGLDRGCS-EIVLKNEWGGKWSLALRCYESAYPTYVGPGWRTFCQVNGIKAGDSFMFKLVG-NGNKPVLLLC 339
                 68999999****************8887.****************66555555999************************9.5666777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-188116IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.02511105IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-1811112IPR015300DNA-binding pseudobarrel domain
CDDcd100178.71E-161299No hitNo description
SMARTSM010193.1E-1914105IPR003340B3 DNA binding domain
PfamPF023622.1E-92399IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.5E-18123209IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-15125209IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.393131228IPR003340B3 DNA binding domain
CDDcd100171.11E-14131225No hitNo description
SMARTSM010193.3E-22132228IPR003340B3 DNA binding domain
PfamPF023621.4E-17135225IPR003340B3 DNA binding domain
PROSITE profilePS5086313.028245341IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-14245341IPR015300DNA-binding pseudobarrel domain
SMARTSM010199.0E-17246342IPR003340B3 DNA binding domain
PfamPF023629.4E-16250339IPR003340B3 DNA binding domain
CDDcd100171.45E-13252339No hitNo description
SuperFamilySSF1019363.92E-15254343IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MEDQSLHSPV NPHFFQPLLP GFHSHLTIPI PFFLKHLQGR NQDHVKIAKL TTDASDRTWT  60
VKIDGLKLTD GWEDFAVAHD LRIGDIIVFR HERELVFHIT AMGPSFCEIQ YTSSSSHNNI  120
NESSSSSDHS RFVAKVSASN LKFDRLYLPM SFARANGLDK MSGEEIILLN EEGRSWSLKL  180
KHDKADMHTF IRPGWRRFCA ENKMSHGHYT LKLVQKSGPP VIRLCGLVHN SPKPVSQSSL  240
NPYCCYVGCV TSNSLKIDKL CLGQAFVIAN GLDRGCSEIV LKNEWGGKWS LALRCYESAY  300
PTYVGPGWRT FCQVNGIKAG DSFMFKLVGN GNKPVLLLCT SKTPLECQEE SSCSDTSSGD  360
DDSSESQESE EESLGDKNIS QECVKMEKNE E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6085631e-150AB608563.1 Raphanus sativus DNA, microsatellite locus RsSR037, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442036.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-133REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A397YJB90.0A0A397YJB9_BRACM; Uncharacterized protein
STRINGBo7g054160.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-124B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]