PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RrC1116_p4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 143aa MW: 16372.8 Da PI: 8.7969 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.1 | 1.1e-36 | 10 | 110 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++ r+Ca+dC+la yfpaeqpk f+nvh+lFG++ ++k+l++l+e ++++am+s+++++ ar r+P++G++g+ ++lq + +++el+++++ RrC1116_p4 10 ACAACKYQCRRCAADCPLALYFPAEQPKLFQNVHRLFGVRSIVKILENLDEAQKPEAMKSIIFQSYARDRNPIHGCLGITQQLQYMIWLAEEELKAVNS 108 7**********************************************************************************************9998 PP DUF260 100 el 101 +l RrC1116_p4 109 QL 110 75 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.963 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-33 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 143 aa Download sequence Send to blast |
MTLKGGTSVA CAACKYQCRR CAADCPLALY FPAEQPKLFQ NVHRLFGVRS IVKILENLDE 60 AQKPEAMKSI IFQSYARDRN PIHGCLGITQ QLQYMIWLAE EELKAVNSQL QTYRNNTNTG 120 QYHQNAHKQM IHKIGEKHEY VTS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-24 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-24 | 6 | 113 | 7 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018469901.1 | 1e-101 | PREDICTED: LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 7e-74 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A078J5G0 | 1e-85 | A0A078J5G0_BRANA; BnaC01g42830D protein | ||||
TrEMBL | A0A0D3A914 | 5e-86 | A0A0D3A914_BRAOL; Uncharacterized protein | ||||
STRING | Bo1g072490.1 | 9e-87 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47870.1 | 3e-76 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
---|---|---|---|
|