PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC110_p10
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 532aa    MW: 62108.6 Da    PI: 4.2732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC110_p10genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.23.7e-2461372128
         NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkyatgkrknra.......tksgyWkatgkdke 91 
                 p G rF+Pt+  lv++yLk+kve+++ +    ik++++y   Pw L++ ++    ++ewy+F++r  +  +    +r+          g+Wk+ gk ke
  RrC110_p10   6 PGGSRFEPTELGLVKRYLKNKVEKNDSDS---IKTLNVYGDAPWLLHHDTNPlyARNEWYYFVPRTVRGVK--TVSRMvpgngesFLGGTWKSVGKRKE 99 
                 779**********************9665...**************85332233678*******9876543..444542333333449*********** PP

         NAM  92 vlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                 +++ ++el+g k++Lvf k+   + + ektdW m+ey+l
  RrC110_p10 100 IKK-NKELKGYKRVLVFNKNvaGELEKEKTDWHMDEYSL 137
                 **9.999***********7532445568*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.36E-294153IPR003441NAC domain
PROSITE profilePS5100530.1475155IPR003441NAC domain
PfamPF023653.5E-167137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MATKYPGGSR FEPTELGLVK RYLKNKVEKN DSDSIKTLNV YGDAPWLLHH DTNPLYARNE  60
WYYFVPRTVR GVKTVSRMVP GNGESFLGGT WKSVGKRKEI KKNKELKGYK RVLVFNKNVA  120
GELEKEKTDW HMDEYSLHKN GDEFHDLVLC HVRLLNSAER FKPLVPPAHQ LDENNDNHVL  180
PNQDQQEAGY AMQEYEGGDV NQHQQQQEEE QEDSRIPLQS NYNQGQYLLE ANVYQNDMMM  240
LENDRGYLNQ HQQQQQQQEQ EYSPIYPHPI NNNLEPCPFD DLGYHGAEDD MTGYGLMPTF  300
NDANQQHEQQ QDSSTLLPPP FQSNYNQRQY LLEDIVSQKD RGYLNQHQQQ QQQQYQEDSR  360
IFPHPPSEIN YNLDPFMCAD LAYITTGYEL MPSFNEGNDV NQQHEQQQDS PPTLQTNDNQ  420
EHHPFEDYAF DGADDNSTFD VDELLNSLDE WKEQQQDQEQ LQKDLQSFLF DHSWDDDFGF  480
DGAAEDDWNM QNMDEGMKQK LQELEEDLSK LLQPVPQPQD SGVHADQVMP KD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464173.10.0PREDICTED: putative uncharacterized protein DDB_G0271606
TrEMBLA0A3P6D8891e-126A0A3P6D889_BRACM; Uncharacterized protein
STRINGBra033406.1-P1e-109(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1883757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03490.13e-27NAC domain containing protein 6