PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC103_p7
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 341aa    MW: 38698.2 Da    PI: 5.0612
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC103_p7genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.25.9e-48221472128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100
                 pGf+F+Ptd el+++yLk+k++g + ++ evi+e+diy++ePwdLp k++ ++++ew+fF++r kky++g++++r+tk gyWk tgk+++v+s + +++
  RrC103_p7  22 FPGFKFSPTDVELISYYLKRKMDGLERSV-EVIPETDIYNFEPWDLPdKSIVKSDTEWFFFCSRGKKYPHGSQNRRTTKMGYWKVTGKERDVKS-SLQVI 119
                69************************999.99***************778888999**************************************.999** PP

        NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
                g+k+tLvf+ grapkg++t+W+mhey +
  RrC103_p7 120 GTKRTLVFHIGRAPKGQRTEWLMHEYCM 147
                **************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5311164IPR003441NAC domain
PROSITE profilePS5100550.27621165IPR003441NAC domain
PfamPF023654.2E-2423146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEAVEVGVSK DMAASVEAST VFPGFKFSPT DVELISYYLK RKMDGLERSV EVIPETDIYN  60
FEPWDLPDKS IVKSDTEWFF FCSRGKKYPH GSQNRRTTKM GYWKVTGKER DVKSSLQVIG  120
TKRTLVFHIG RAPKGQRTEW LMHEYCMKGG VFMDDALVVC RLRRNREFRT YTSQKAPPVP  180
DLAADKHMIL QNGDANSGSP SDWESMVDFY LAGESWDNHV TETPENLQVE TEEDFYGDIL  240
RDDIINLDEM VMMGKAPNEV PTLESASMAI RILPLPNMID RHMASFLEEM PSQENKGKGS  300
SGTEPLSSCF IGLYSIKSVN RARWNVIIGV IGLIVMLSFL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-402316622169NAC domain-containing protein 19
3swm_B8e-402316622169NAC domain-containing protein 19
3swm_C8e-402316622169NAC domain-containing protein 19
3swm_D8e-402316622169NAC domain-containing protein 19
3swp_A8e-402316622169NAC domain-containing protein 19
3swp_B8e-402316622169NAC domain-containing protein 19
3swp_C8e-402316622169NAC domain-containing protein 19
3swp_D8e-402316622169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in plant cell division. {ECO:0000269|PubMed:16803883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018444205.10.0PREDICTED: NAC domain-containing protein 89-like
RefseqXP_018445775.10.0PREDICTED: NAC domain-containing protein 89-like
SwissprotQ94F580.0NAC89_ARATH; NAC domain-containing protein 89
TrEMBLA0A397XKM60.0A0A397XKM6_BRACM; Uncharacterized protein
STRINGBra002403.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43092356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22290.10.0NAC domain containing protein 89
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]