PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10210_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 200aa    MW: 22750.3 Da    PI: 10.4279
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10210_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.3e-18291052198
                  HH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3  21 kfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  +f++++g+ k +  +++l++ +g +W + l+ + + +++v+++GW++F++angLk++D++ Fkl+g +++++v++++ 
  RrC10210_p2  29 RFVNSNGLMKGRCCEMILKNDNGGTWCLVLRRNETNETTVISRGWRSFCHANGLKVRDTFRFKLVG-TGEKPVLQLCP 105
                  79999999999999****************98888889**************************99.77779999986 PP
2B359.46.3e-19102195499
                  E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +l p+ ++++ r +lp +f++++g++k++  ++tl+ ++g  W v l+ ++k+gr+ l++GWk+F +a+g+k g+++v++l++++++++v+++++k
  RrC10210_p2 102 QLCPAESNRNTRHRLPLRFTRDNGINKAG--KITLMCQDGVNWMVSLTNENKGGRMRLGRGWKGFYEAQGVKLGESFVLELIWEKDASPVLRFCNK 195
                  5778888999999*************888..69999999*********9*******************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-1712109IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.9E-1517107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-1422105IPR015300DNA-binding pseudobarrel domain
CDDcd100171.23E-1629105No hitNo description
PROSITE profilePS508639.6574397IPR003340B3 DNA binding domain
PROSITE profilePS5086312.12599196IPR003340B3 DNA binding domain
PfamPF023625.3E-18102195IPR003340B3 DNA binding domain
CDDcd100171.77E-12107184No hitNo description
SuperFamilySSF1019364.12E-16110193IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-16111195IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.1E-11112196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MAGEASVVPM GLTEWDLSRL QAYVTMRWRF VNSNGLMKGR CCEMILKNDN GGTWCLVLRR  60
NETNETTVIS RGWRSFCHAN GLKVRDTFRF KLVGTGEKPV LQLCPAESNR NTRHRLPLRF  120
TRDNGINKAG KITLMCQDGV NWMVSLTNEN KGGRMRLGRG WKGFYEAQGV KLGESFVLEL  180
IWEKDASPVL RFCNKVNSTV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108913.13e-96PREDICTED: B3 domain-containing protein REM17-like
TrEMBLA0A078GD433e-90A0A078GD43_BRANA; BnaA08g12400D protein
TrEMBLM4D1763e-90M4D176_BRARP; Uncharacterized protein
STRINGBra010225.1-P5e-91(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3733422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00260.11e-34B3 family protein