PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pta000964

Organism

Pinus taeda

Taxonomic ID

3352

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pinus; Pinus

Family

GeBP

Protein Properties

Length: 617aa MW: 67474.2 Da PI: 6.8677

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pta#S24127778	PU_unref	Unigene	View CDS
PUT-157a-Pinus_taeda-76482552	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	57.4	4.2e-18	315	412	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksg....kepsfskehdqkifelskkiWg 97 +w+++Deiv++ G + + ak+g + +++ ++ e++++s+ ++sk ql eK+rr+K +++ ++k+++g + ++ +++h+++ ++l k+ Wg Pta000964 315 TAHVWTDNDEIVIMHGYLVC-AKEGLELPKNTPQLLEKINDSLAHEASKPQLYEKLRRMKARYESIKNKMDQGnikeDVFAYKSPHEKELYKLWKQAWG 412 6789*************9.899************************************9999965541111556789*************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.8E-18	317	412	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence Send to blast
MAFFSNGQAH SGDSSSDIDS EEKGFYAKAN RSQRQQSSST SASSSDSEHE VVSTRPAAEK 60 PAAPPSPKKN PNSSDRSAVR NQSIPSSPNP NIPSASKLKK AAAAKKTKDD DFAENRSQRQ 120 QSSSTSASSS DSEHEDVSKR PAAEKPAAPP SPKKNPNSSD KSAVRNQSTP SEPNPNTLST 180 SKPKKAAAAK RAKDDAFAEE QPEPKKKSAS KAKKPAEDVA KDDDFAGEQP ELKKKSVSKG 240 KKAAVEEVVK DVEAAKQTEP KKKLVSNGKK PAEEEVPASN PTKKKPRKQQ QESPAAVPMA 300 TPSAKDSPQK SSKKTAHVWT DNDEIVIMHG YLVCAKEGLE LPKNTPQLLE KINDSLAHEA 360 SKPQLYEKLR RMKARYESIK NKMDQGNIKE DVFAYKSPHE KELYKLWKQA WGEQHEEDEM 420 EVDHIEAVGD DTHRPGEDQI TAAEDQTSAG DRGEEDEEEE AEDESDGGTD TYKELKTPSP 480 EKPSVSNHIP SKAPVSNHIP VKPPVSSTAI PNNKREDRVD YETIMKETRD MLAEVTRDVK 540 KMAEKSEAEL KALLDSHLSS ANGVRGTGVA SGGRINSAVW ARNRDPGLDG IYYPRELPPL 600 DGARARILEG KWREVEX

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence Send to blast

MAFFSNGQAH SGDSSSDIDS EEKGFYAKAN RSQRQQSSST SASSSDSEHE VVSTRPAAEK  60
PAAPPSPKKN PNSSDRSAVR NQSIPSSPNP NIPSASKLKK AAAAKKTKDD DFAENRSQRQ  120
QSSSTSASSS DSEHEDVSKR PAAEKPAAPP SPKKNPNSSD KSAVRNQSTP SEPNPNTLST  180
SKPKKAAAAK RAKDDAFAEE QPEPKKKSAS KAKKPAEDVA KDDDFAGEQP ELKKKSVSKG  240
KKAAVEEVVK DVEAAKQTEP KKKLVSNGKK PAEEEVPASN PTKKKPRKQQ QESPAAVPMA  300
TPSAKDSPQK SSKKTAHVWT DNDEIVIMHG YLVCAKEGLE LPKNTPQLLE KINDSLAHEA  360
SKPQLYEKLR RMKARYESIK NKMDQGNIKE DVFAYKSPHE KELYKLWKQA WGEQHEEDEM  420
EVDHIEAVGD DTHRPGEDQI TAAEDQTSAG DRGEEDEEEE AEDESDGGTD TYKELKTPSP  480
EKPSVSNHIP SKAPVSNHIP VKPPVSSTAI PNNKREDRVD YETIMKETRD MLAEVTRDVK  540
KMAEKSEAEL KALLDSHLSS ANGVRGTGVA SGGRINSAVW ARNRDPGLDG IYYPRELPPL  600
DGARARILEG KWREVEX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pta.20041	0.0	embryo\| root

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04930.2	2e-11	DNA-binding storekeeper protein-related transcriptional regulator