PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.8G122600.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 417aa    MW: 46775.8 Da    PI: 5.5251
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.8G122600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.82e-1898187299
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         +kv++ps+v+   +l++pkkf  +h   ++++++++lede+g+++e k+ ++k++    l++GW++F  a++L +gD+v+F+++    f+ 
  Prupe.8G122600.1.p  98 LKVMMPSHVTGGFCLSIPKKFSCQHL--PKQDTMIILEDEDGKEFETKYLVEKGG----LSGGWRGFSIAHKLLQGDIVIFHVV--APFKI 180
                         69*******************86774..45788****************666666....9**********************65..58999 PP

                         EEEEE-S CS
                  B3  93 vvkvfrk 99 
                         +v ++r+
  Prupe.8G122600.1.p 181 KVYIVRS 187
                         9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1889188IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-2290189IPR015300DNA-binding pseudobarrel domain
CDDcd100171.84E-2295186No hitNo description
PROSITE profilePS5086312.09797188IPR003340B3 DNA binding domain
SMARTSM010193.0E-1497188IPR003340B3 DNA binding domain
PfamPF023621.7E-1698187IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MREPMAVLQD QNRNFSYPPS ESMKMEKLFG QKSSCLELMA LSNVVNVNPI MSQSHKRKRV  60
ITRVKVESLY DSSQAQSSVM ERAKKVEASL DPKFPVLLKV MMPSHVTGGF CLSIPKKFSC  120
QHLPKQDTMI ILEDEDGKEF ETKYLVEKGG LSGGWRGFSI AHKLLQGDIV IFHVVAPFKI  180
KVYIVRSNGL DEVDCVHGLM RLDACTKQIN AGQIIPYETE KSGPVSDQSE NDSEDLGFEF  240
MDGLRLAESD VTFKEVKCME NFTVVVNGLV INSEFSNYIL TKYYELCCSQ NAFLHEHLLE  300
GLNCKLIAGV ISETVNIADA IRACKITTTE GDFSTWSKTL KAFEDLGMNS GFLRVRLDRL  360
ASLASESKRL KEARLEKDHP EEEMTSLDAN PLEVKETINM TSILELTFQE VAKAPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.8G122600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007199172.20.0B3 domain-containing protein Os01g0234100
TrEMBLA0A251MZW70.0A0A251MZW7_PRUPE; Uncharacterized protein
STRINGXP_008236548.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-36B3 family protein