PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Prupe.6G286000.1.p | ||||||||
Common Name | PRUPE_ppa004009mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
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Family | WRKY | ||||||||
Protein Properties | Length: 536aa MW: 59336 Da PI: 7.3047 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.3 | 2.7e-32 | 234 | 291 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDg+nWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers d+++++i+Y+g+Hnh+k Prupe.6G286000.1.p 234 DDGFNWRKYGQKQVKGSENPRSYYKCTYPNCSTKKKVERSL-DGHITQIVYKGSHNHPK 291 8****************************************.***************85 PP | |||||||
2 | WRKY | 105.9 | 2.1e-33 | 398 | 456 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Cts gCpv+k+ver+++d+++v++tYeg+Hnh+ Prupe.6G286000.1.p 398 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCPVRKHVERASHDTRAVITTYEGKHNHD 456 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.4E-27 | 226 | 292 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.032 | 228 | 292 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-25 | 230 | 292 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-34 | 233 | 291 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-24 | 234 | 290 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-37 | 383 | 458 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-29 | 390 | 458 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.779 | 393 | 458 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 398 | 457 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-25 | 399 | 456 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0070370 | Biological Process | cellular heat acclimation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 536 aa Download sequence Send to blast |
MTSSFTHLLT SNMNNMDSNI DQERTNWGLS DYSSGSLMDR NGNEIPNFKS LQPPSLPMSP 60 PPVSPSSYLA STPAFSPTDF FSSPMFLSSS NTLQSPTSGA FSSQIFDWMS NSKETQQGME 120 REQKMFSDFS FQPETRPAAT SSSTFNIQAS SNMASEESLK TGQKPWDFNR ISRQADSLTE 180 KTGVKSEFEP LQSIFPEIGT NQTNMQSNGP SGAPKPDTIH CTQSSQFVRE QKSDDGFNWR 240 KYGQKQVKGS ENPRSYYKCT YPNCSTKKKV ERSLDGHITQ IVYKGSHNHP KPQSTRRSTS 300 QSIQGSSYGI SDQSVPTISN PKIESVTMQE DSSASIGEDE FEQNSPISNS GGAEDENEPE 360 AKRWKGENAN DQPFSAPGSR IVKEPRIVVQ TTSEIDILDD GYRWRKYGQK VVKGNPNPRS 420 YYKCTSVGCP VRKHVERASH DTRAVITTYE GKHNHDVPAA RGSGSYSNAN RPASDNGSNN 480 NSNVSMAVRP LALPNHSNLS YLNSLQNTRQ PTTERQSPYT LKMLQSEGSY GFPEF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-34 | 234 | 459 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-34 | 234 | 459 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Prupe.6G286000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007205027.1 | 0.0 | probable WRKY transcription factor 33 | ||||
Swissprot | Q6B6R4 | 1e-119 | WRK24_ORYSI; WRKY transcription factor WRKY24 | ||||
TrEMBL | M5VYP1 | 0.0 | M5VYP1_PRUPE; Uncharacterized protein | ||||
STRING | EMJ06226 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1077 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 1e-109 | WRKY DNA-binding protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Prupe.6G286000.1.p |
Entrez Gene | 18772845 |
Publications ? help Back to Top | |||
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