PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G243000.1.p
Common NamePRUPE_ppa007903mg
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C3H
Protein Properties Length: 353aa    MW: 40214.4 Da    PI: 6.401
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G243000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.1e-0690113226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         k  lC f+ + G+C  G +CkF+H+
  Prupe.6G243000.1.p  90 KSILCEFYKA-GQCAKGFKCKFSHD 113
                         6679**7777.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.53E-688113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.06588115IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-488114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-490114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.244158196IPR000571Zinc finger, CCCH-type
SMARTSM003563.4158195IPR000571Zinc finger, CCCH-type
PfamPF165431.2E-17215294IPR032378ZC3H15/TMA46 family, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MPPKQQSKAD LAKKQKIVED KTFGLKNKNK SKNVQKYVQT LKQSVQPQSD PSKTAAKKKK  60
EEDKAKDKEL NELFKVAVSQ PKVPVGVDPK SILCEFYKAG QCAKGFKCKF SHDLNVQRKG  120
EKIDIYSDKR DHDTMEEWDQ ETLEKVVESK KNEYQQNKPT DIVCKYFLEA VEKKQYGWFW  180
VCPNGGKNCH YRHALPPGYV LKSQMKALLE EEAEKIPIEE EIENQRAKVT TSTPMTTELF  240
MQWKKKKMAE RDAGLAAEMA ERAKNDRMSG RELFLSDSSL FVDDVEAHEK YQRDQEPPVA  300
EQKVSANSNR DRLGGGAKVT NDDDDDELDI DELNELEASL SKVTIQEPDT AA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G243000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007205459.10.0zinc finger CCCH domain-containing protein 11
SwissprotQ0JHZ21e-175C3H11_ORYSJ; Zinc finger CCCH domain-containing protein 11
TrEMBLM5WBL20.0M5WBL2_PRUPE; Uncharacterized protein
STRINGEMJ066580.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44191113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-158C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]