PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Prupe.6G119300.1.p
Organism
Prunus persica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19586.9 Da    PI: 4.4829
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Prupe.6G119300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141053245
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                        +i+nk   + tfskRr+g++ KA  L+ L +a++a+i fs+ +k
  Prupe.6G119300.1.p 10 KINNKNYLKATFSKRRKGLFRKATDLCCLSGAQIAIITFSPGNK 53
                        589999999*******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006619.007161IPR002100Transcription factor, MADS-box
SMARTSM004327.6E-19160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-21273IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-11323IPR002100Transcription factor, MADS-box
PfamPF003198.1E-171057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRHQINIMK INNKNYLKAT FSKRRKGLFR KATDLCCLSG AQIAIITFSP GNKPFLFGNP  60
SAKAVLDRFL GEQDSCTSND HDEEGLGSTP EDSDHGDLEA SQEGSNEIED VMDEDRVNFW  120
WDEPIDDELG IYELQKYKGL LEALKENVAS KLDDMNRREF YTKDFLSMFC IS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPrupe.6G119300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020421249.11e-126agamous-like MADS-box protein AGL62
TrEMBLA0A251NQQ61e-125A0A251NQQ6_PRUPE; MADS-box protein 25
STRINGEMJ089681e-107(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-31AGAMOUS-like 61